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Visualization tools can help synthetic biologists and molecular programmers understand the complex reactive pathways of nucleic acid reactions, which can be designed for many potential applications and can be modelled using a…
Quantum--Mechanical methods that are both computationally fast and accurate are not yet available for electronic excitations having charge transfer character. In this work, we present a significant step forward towards this goal for those…
Quantum embedding methods have recently developed significantly to model large molecular structures. This work proposes a novel wave function theory in density functional theory (WTF-in-DFT) embedding scheme based on pair-coupled cluster…
We study the role of cations on the stability of double stranded DNA (dsDNA) molecules.It is known that the two strands of double stranded DNA(dsDNA) have negative charge due to phosphate group. Cations in the form of salt in the solution,…
We derive the nonequilibrium conductance matrix for open stationary Chemical Reaction Networks (CRNs) described by a deterministic mass action kinetic equation. As an illustration, we determine the nonequilibrium conductance matrix of a CRN…
We give a constructive method for realizing an arbitrary directed graph (with no one-cycles) as a heteroclinic or an excitable dynamic network in the phase space of a system of coupled cells of two types. In each case, the system is…
Curved Trajectory Detection (CTD) process could be considered among high-level planned capabilities for cognitive agents, has which been acquired under aegis of embedded artificial spiking neuronal circuits. In this paper, hard-wired…
Excited states of the of the double-stranded DNA model (A)$_{12}\cdot$(T)_{12} were calculated in the framework of the exciton theory. The off-diagonal elements of the exciton matrix were calculated using the transition densities and ideal…
Over the last decade, the growing amount of UL and DL mobile data traffic has been characterized by substantial asymmetry and time variations. Dynamic time-division duplex (TDD) has the capability to accommodate to the traffic asymmetry by…
A detailed description of the conformational plasticity of double stranded DNA (ds) is a necessary framework for understanding protein-DNA interactions. Until now, however structure and kinetics of the transition from the basic conformation…
Dense pixel matching is important for many computer vision tasks such as disparity and flow estimation. We present a robust, unified descriptor network that considers a large context region with high spatial variance. Our network has a very…
We consider power networks in which it is not possible to satisfy all loads at the demand nodes, due to some attack or disturbance to the network. We formulate a model, based on AC power flow equations, to restore the network to feasibility…
The computation and memory-intensive nature of DNNs limits their use in many mobile and embedded contexts. Application-specific integrated circuit (ASIC) hardware accelerators employ matrix multiplication units (such as the systolic arrays)…
We perform a spatially resolved simulation study of an AND gate based on DNA strand displacement using several lengths of the toehold and the adjacent domains. DNA strands are modelled using a coarse-grained dynamic bonding model {[}C.…
To settle a large-scale integration of renewable distributed generations (DGs), it requires to assess the maximal DG hosting capacity of active distribution networks (ADNs). For fully exploiting the ability of ADNs to accommodate DG, this…
Adaptive Demodulation (ADM) is a newly proposed rate-adaptive system which operates without requiring Channel State Information (CSI) at the transmitter (unlike adaptive modulation) by using adaptive decision region boundaries at the…
We analyze the $^{16}{\rm C}+p$ and $^{16}{\rm C}+d$ reactions within the four- and five-body Continuum Discretized Coupled Channel (CDCC) method. The $^{16}$C nucleus is described by a $^{14}{\rm C}+n+n$ configuration in hyperspherical…
We demonstrate a catalytic control method for speeding up the single-molecule DNA motor introduced by Li and Tan [Nano Lett. {\bf 2}, 315 (2002)]. A key rate-limiting barrier in the reaction part of the cycle is the tendency for the second…
The response of a semiflexible polyelectrolyte chain to stretching in the regimes of moderate and weak screening is studied theoretically, with a special focus on DNA experiments. By using the nonlinear Poisson--Boltzmann description of…
The light-driven reactions of photosynthesis, as well as the mitochondrial power supply, are hosted within specialized membranes containing a high fraction of redoxactive lipids. Protein mobility and diffusion of redox lipids is believed to…