Related papers: Power series method for solving TASEP-based models…
Triply periodic minimal surface (TPMS) is emerging as an important way of designing microstructures. However, there has been limited use of commercial CAD/CAM/CAE software packages for TPMS design and manufacturing. This is mainly because…
We propose regularized approximate message passing (RAMP), a low-complexity algorithm for discrete signal detection in overloaded multiple-input multiple-output (MIMO) systems where the number of transmit antennas exceeds the number of…
We introduce a model for stochastic transport on a one-dimensional substrate with particles assuming different conformations during their stepping cycles. These conformations correspond to different footprints on the substrate: in order to…
During mRNA translation, several ribosomes attach to the same mRNA molecule simultaneously translating it into a protein. This pipelining increases the protein production rate. A natural and important question is what ribosomal density…
In [AAV] Amir, Angel and Valk{\'o} studied a multi-type version of the totally asymmetric simple exclusion process (TASEP) and introduced the TASEP speed process, which allowed them to answer delicate questions about the joint distribution…
We formulate and analyze the steady-state behavior of totally asymmetric simple exclusion processes (TASEPs) that contain periodically varying movement rates. In our models, particles at a majority sites hop to the right with rate $p_1$…
In this paper, we consider zero range process with an initial condition which is equivalent to step initial condition in total asymmetric simple exclusion process (TASEP) as described in a paper by R\'akos, A. and Sch\"utz by using…
We study the totally asymmetric simple exclusion process (TASEP) on $\mathbb{Z}$ with a general initial condition and a deterministically moving wall in front of the particles. Using colour-position symmetry, we express the one-point…
We consider the totally asymmetric simple exclusion process (TASEP) on a finite lattice with open boundaries. We show, using the recursive structure of the Markov matrix that encodes the dynamics, that there exist two transfer matrices…
The ribosome flow model (RFM) is a phenomenological model for the flow of particles along a 1D chain of $n$ sites. It has been extensively used to study ribosome flow along the mRNA molecule during translation. When the transition rates…
In this article we present a comprehensive study of the totally asymmetric simple exclusion process with pausing particles (pTASEP), a model initially introduced to describe RNAP dynamics during transcription. We extend previous mean-field…
In the multi-type totally asymmetric simple exclusion process (TASEP) on the line, each site of Z is occupied by a particle labeled with some number, and two neighboring particles are interchanged at rate one if their labels are in…
The oriented swap process is a natural directed random walk on the symmetric group that can be interpreted as a multi-species version of the Totally Asymmetric Simple Exclusion Process (TASEP) on a finite interval. An open problem from a…
We study the totally asymmetric simple exclusion process (TASEP) on $\mathbb{Z}$ with step initial condition, in which all particles have distinct types. Our main object of interest is the type of the rightmost particle -- the leader -- at…
We consider the asymmetric simple exclusion process (ASEP) with forward hopping rate 1, backward hopping rate q and periodic boundary conditions. We show that the Bethe equations of ASEP can be decoupled, at all order in perturbation in the…
Deprivation of essential nutrients can have stark consequences for many processes in a cell. We consider amino acid starvation, which can result in bottlenecks in mRNA translation when ribosomes stall due to lack of resources, i.e. tRNAs…
We propose a new family of message passing techniques for MAP estimation in graphical models which we call {\em Sequential Reweighted Message Passing} (SRMP). Special cases include well-known techniques such as {\em Min-Sum Diffusion} (MSD)…
Cell migration, which can be significantly affected by intracellular signaling pathways (ICSP) and extracellular matrix (ECM), plays a crucial role in many physiological and pathological processes. The efficiency of cell migration, which is…
We develop a stochastic model for the programmed frameshift of ribosomes synthesizing a protein while moving along a mRNA template. Normally the reading frame of a ribosome decodes successive triplets of nucleotides on the mRNA in a…
Gene silencing via small interfering RNA (siRNA) represents a transformative tool in cancer therapy, offering specificity and reduced off-target effects compared to conventional treatments. A crucial step in siRNA-based therapies is…