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Angiogenesis is a key phenomenon for tumour progression, diagnosis and treatment in brain tumours and more generally in oncology. Presently, its precise, direct quantitative assessment can only be done on whole tissue sections immunostained…

Tissues and Organs · Quantitative Biology 2017-09-08 Christophe Deroulers , Volodia Dangouloff-Ros , Mathilde Badoual , Pascale Varlet , Nathalie Boddaert

Functional Magnetic Resonance Imaging (fMRI) captures the temporal dynamics of neural activity as a function of spatial location in the brain. Thus, fMRI scans are represented as 4-Dimensional (3-space + 1-time) tensors. And it is widely…

Computer Vision and Pattern Recognition · Computer Science 2020-02-17 Ahmed El-Gazzar , Mirjam Quaak , Leonardo Cerliani , Peter Bloem , Guido van Wingen , Rajat Mani Thomas

Vertebrae identification in arbitrary fields-of-view plays a crucial role in diagnosing spine disease. Most spine CT contain only local regions, such as the neck, chest, and abdomen. Therefore, identification should not depend on specific…

Computer Vision and Pattern Recognition · Computer Science 2024-01-17 Sheng Zhang , Minheng Chen , Junxian Wu , Ziyue Zhang , Tonglong Li , Cheng Xue , Youyong Kong

We describe a new method to automatically discriminate between patients with Alzheimer's disease (AD) or mild cognitive impairment (MCI) and elderly controls, based on multidimensional classification of hippocampal shape features. This…

Current neuroimaging techniques provide paths to investigate the structure and function of the brain in vivo and have made great advances in understanding Alzheimer's disease (AD). However, the group-level analyses prevalently used for…

Quantitative Methods · Quantitative Biology 2021-05-31 Nanyan Zhu , Chen Liu , Xinyang Feng , Dipika Sikka , Sabrina Gjerswold-Selleck , Scott A. Small , Jia Guo

Tissue classification is one of the significant tasks in the field of biomedical image analysis. Magnetic Resonance Imaging (MRI) is of great importance in tissue classification especially in the areas of brain tissue classification which…

Computer Vision and Pattern Recognition · Computer Science 2020-01-28 Shadman Sakib , Md. Abu Bakr Siddique

A brain tumor consists of cells showing abnormal brain growth. The area of the brain tumor significantly affects choosing the type of treatment and following the course of the disease during the treatment. At the same time, pictures of…

Image and Video Processing · Electrical Eng. & Systems 2024-01-08 Pegah Ahadian , Maryam Babaei , Kourosh Parand

A novel multi-focus image fusion algorithm performed in spatial domain based on similarity characteristics is proposed incorporating with region segmentation. In this paper, a new similarity measure is developed based on the structural…

Computer Vision and Pattern Recognition · Computer Science 2022-02-01 Ya-Qiong Zhang , Xiao-Jun Wu , Hui Li

The Segment Anything Model (SAM) exhibits strong zero-shot performance on natural images but suffers from domain shift and overconfidence when applied to medical volumes. We propose \textbf{CalSAM}, a lightweight adaptation framework that…

Computer Vision and Pattern Recognition · Computer Science 2025-09-30 Behraj Khan , Tahir Qasim Syed

Recent unsupervised person re-identification (re-ID) methods achieve high performance by leveraging fine-grained local context. These methods are referred to as part-based methods. However, most part-based methods obtain local contexts…

Computer Vision and Pattern Recognition · Computer Science 2024-03-04 Jiahao Hong , Jialong Zuo , Chuchu Han , Ruochen Zheng , Ming Tian , Changxin Gao , Nong Sang

The performance of image classification methodsheavily relies on the high-quality annotations, which are noteasily affordable, particularly for medical data. To alleviate thislimitation, in this study, we propose a weakly supervised…

Image and Video Processing · Electrical Eng. & Systems 2021-09-29 Maedeh Sadat Fasihi , Wasfy B. Mikhael

Quality control (QC) has long been considered essential to guarantee the reliability of neuroimaging studies. It is particularly important for fetal brain MRI, where acquisitions and image processing techniques are less standardized than in…

This paper presents FeTal-SAM, a novel adaptation of the Segment Anything Model (SAM) tailored for fetal brain MRI segmentation. Traditional deep learning methods often require large annotated datasets for a fixed set of labels, making them…

Computer Vision and Pattern Recognition · Computer Science 2026-01-23 Qi Zeng , Weide Liu , Bo Li , Ryne Didier , P. Ellen Grant , Davood Karimi

Sub-cortical brain structure segmentation in Magnetic Resonance Images (MRI) has attracted the interest of the research community for a long time because morphological changes in these structures are related to different neurodegenerative…

Computer Vision and Pattern Recognition · Computer Science 2018-11-15 Kaisar Kushibar , Sergi Valverde , Sandra Gonzalez-Villa , Jose Bernal , Mariano Cabezas , Arnau Oliver , Xavier Llado

Magnetic Resonance Imaging (MRI) is widely used in the pathological and functional studies of the brain, such as epilepsy, tumor diagnosis, etc. Automated accurate brain tissue segmentation like cerebro-spinal fluid (CSF), gray matter (GM),…

Computer Vision and Pattern Recognition · Computer Science 2018-08-07 Yao Sun , Yang Deng , Yue Xu , Shuo Zhang , Mingwang Zhu , Kehong Yuan

Accurate segmentation of MR brain tissue is a crucial step for diagnosis,surgical planning, and treatment of brain abnormalities. However,it is a time-consuming task to be performed by medical experts. So, automatic and reliable…

Computer Vision and Pattern Recognition · Computer Science 2018-07-31 Yang Deng , Yao Sun , Yongpei Zhu , Mingwang Zhu , Wei Han , Kehong Yuan

Large medical imaging data sets are becoming increasingly available, but ensuring sample quality without significant artefacts is challenging. Existing methods for identifying imperfections in medical imaging rely on data-intensive…

Image and Video Processing · Electrical Eng. & Systems 2023-11-15 Daniele Ravi , Frederik Barkhof , Daniel C. Alexander , Lemuel Puglisi , Geoffrey JM Parker , Arman Eshaghi

Machine learning algorithms underpin modern diagnostic-aiding software, which has proved valuable in clinical practice, particularly in radiology. However, inaccuracies, mainly due to the limited availability of clinical samples for…

Diagnosing Autism Spectrum Disorder (ASD) is a challenging problem, and is based purely on behavioral descriptions of symptomology (DSM-5/ICD-10), and requires informants to observe children with disorder across different settings (e.g.…

Neurons and Cognition · Quantitative Biology 2020-03-04 Taban Eslami , Joseph S. Raiker , Fahad Saeed

Resting-state functional magnetic resonance imaging (rs-fMRI) is a noninvasive technique pivotal for understanding human neural mechanisms of intricate cognitive processes. Most rs-fMRI studies compute a single static functional…

Neurons and Cognition · Quantitative Biology 2025-02-25 Bishal Thapaliya , Robyn Miller , Jiayu Chen , Yu-Ping Wang , Esra Akbas , Ram Sapkota , Bhaskar Ray , Pranav Suresh , Santosh Ghimire , Vince Calhoun , Jingyu Liu