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In a world being hit by waves of COVID-19, vaccination is a light on the horizon. However, the roll-out of vaccination strategies and their influence on the pandemic are still open problems. In order to compare the effect of various…

Physics and Society · Physics 2021-04-23 N. L. Barreiro , C. I. Ventura , T. Govezensky , M. Núñez , P. G. Bolcatto , R. A. Barrio

In December 2019, the first patients in Wuhan, China were diagnosed with a primary atypical pneumonia, which showed to be unknown and contagious. Since then, known as COVID-19 disease, the responsible viral pathogen, SARS-CoV-2, has spread…

Populations and Evolution · Quantitative Biology 2024-01-30 Philipp Heider

Mechanistic models fit to streaming surveillance data are critical to understanding the transmission dynamics of an outbreak as it unfolds in real-time. However, transmission model parameter estimation can be imprecise, and sometimes even…

The global SARS-CoV-2 pandemic suggests a novel type of disease spread dynamics. WHO states that there is currently no evidence that people who have recovered from COVID-19 and have antibodies are immune from a second infection [WHO].…

Physics and Society · Physics 2020-08-03 Kurt Langfeld

A mathematical model was developed describing the dynamic of the COVID-19 virus over a population considering that the infected can either be symptomatic or not. The model was calibrated using data on the confirmed cases and death from…

Populations and Evolution · Quantitative Biology 2020-04-14 Jayrold P. Arcede , Randy L. Caga-anan , Cheryl Q. Mentuda , Youcef Mammeri

The estimate of the cumulative incidence of SARS-CoV-2 of 76% in Manaus by October 2020 by Buss et al. relies on the assumption of an exponentially-declining probability of sero-reversion over time. We present an alternative,…

Populations and Evolution · Quantitative Biology 2021-03-26 Sarah Kadelka , Judith A Bouman , Peter Ashcroft , Roland R Regoes

Large-scale testing is considered key to assess the state of the current COVID-19 pandemic. Yet, the link between the reported case numbers and the true state of the pandemic remains elusive. We develop mathematical models based on…

Applications · Statistics 2021-02-04 Michel Besserve , Simon Buchholz , Bernhard Schölkopf

COVID-19 has forced quarantine measures in several countries across the world. These measures have proven to be effective in significantly reducing the prevalence of the virus. To date, no effective treatment or vaccine is available. In the…

Populations and Evolution · Quantitative Biology 2020-12-02 Davide Faranda , Tommaso Alberti

We propose a novel methodology for estimating the epidemiological parameters of a modified SIRD model (acronym of Susceptible, Infected, Recovered and Deceased individuals) and perform a short-term forecast of SARS-CoV-2 virus spread. We…

Several analytical models have been used in this work to describe the evolution of death cases arising from coronavirus (COVID-19). The Death or `D' model is a simplified version of the SIR (susceptible-infected-recovered) model, which…

Populations and Evolution · Quantitative Biology 2020-11-19 J. E. Amaro , J. Dudouet , J. N. Orce

This paper presents a critical analysis of the literature and perspective research ideas for modeling the epidemics caused by the SARS-CoV-2 virus. It goes beyond deterministic population dynamics to consider several key complexity features…

Populations and Evolution · Quantitative Biology 2025-01-24 Giulia Bertaglia , Andrea Bondesan , Diletta Burini , Raluca Eftimie , Lorenzo Pareschi , Giuseppe Toscani

We present a compartmental SEIRD model aimed at forecasting hospital occupancy in metropolitan areas during the current COVID-19 outbreak. The model features asymptomatic and symptomatic infections with detailed hospital dynamics. We model…

Populations and Evolution · Quantitative Biology 2020-06-08 Marcos A. Capistran , Antonio Capella , J. Andres Christen

In this paper, a susceptible-infected-removed (SIR) model has been used to track the evolution of the spread of the COVID-19 virus in four countries of interest. In particular, the epidemic model, that depends on some basic characteristics,…

Populations and Evolution · Quantitative Biology 2020-10-28 Ian Cooper , Argha Mondal , Chris G. Antonopoulos

We consider the SEIRS epidemiology model with such features of the COVID-19 outbreak as: abundance of unidentified infected individuals, limited time of immunity and a possibility of vaccination. The control of the pandemic dynamics is…

Populations and Evolution · Quantitative Biology 2026-03-31 J. Ilnytskyi , T. Patsahan

During an ongoing epidemic, especially in the case of a new agent, data are partial and sparse, also affected by external factors as for example climatic effects or preparedness and response capability of healthcare structures. Despite that…

Methodology · Statistics 2021-04-26 Filippo Carone Fabiani

The Covid-19 pandemic has taken millions of lives, demonstrating the tragedy and disruption of respiratory diseases, and how difficult they can be to manage. However, there is still significant debate in the scientific community as to which…

Dynamical Systems · Mathematics 2021-09-03 Panagiotis Demis , Ishanki De Mel , Hayley Wragg , Michael Short , Oleksiy V. Klymenko

This paper is an exploratory study of two epidemiological questions on a worldwide basis. How fast is the disease spreading? Are the restrictions (especially mobility restrictions) for people bring the expected effect? To answer the first…

Social and Information Networks · Computer Science 2021-08-30 Tatiana Petrova , Dmitri Soshnikov , Andrey Grunin

The unprecedented coronavirus disease 2019 (COVID-19) pandemic is still a worldwide threat to human life since its invasion into the daily lives of the public in the first several months of 2020. Predicting the size of confirmed cases is…

Applications · Statistics 2020-12-02 Xinyu Wang , Lu Yang , Hong Zhang , Zhouwang Yang , Catherine Liu

Background: The global spread of the severe acute respiratory syndrome (SARS) epidemic has clearly shown the importance of considering the long-range transportation networks in the understanding of emerging diseases outbreaks. The…

Other Quantitative Biology · Quantitative Biology 2008-01-16 Vittoria Colizza , Alain Barrat , Marc Barthelemy , Alessandro Vespignani

Latin America is experiencing severe impacts of the SARS-CoV-2 pandemic, but poverty and weak public health institutions hamper gathering the kind of refined data needed to inform classical SEIR models of epidemics. We present an…

Populations and Evolution · Quantitative Biology 2020-05-25 José Miguel Ponciano , Juan Adolfo Ponciano , Juan Pablo Gómez , Robert D. Holt , Jason K. Blackburn