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Controllable arrays of ions and ultra-cold atoms can simulate complex many-body phenomena and may provide insights into unsolved problems in modern science. To this end, experimentally feasible protocols for quantifying the buildup of…

Being able to measure time, whether directly or indirectly, is a significant advantage for an organism. It permits it to predict regular events, and prepare for them on time. Thus, clocks are ubiquitous in biology. In the present paper, we…

Other Quantitative Biology · Quantitative Biology 2017-06-23 Andrei D. Robu , Christoph Salge , Chrystopher L. Nehaniv , Daniel Polani

Scientists often express their understanding of the world through a computationally demanding simulation program. Analyzing the posterior distribution of the parameters given observations (the inverse problem) can be extremely challenging.…

Machine Learning · Computer Science 2014-01-14 Edward Meeds , Max Welling

Atomic lattice clocks have spurred numerous ideas for tests of fundamental physics, detection of general relativistic effects, and studies of interacting many-body systems. On the other hand, molecular structure and dynamics offer rich…

Atomic Physics · Physics 2019-11-12 S. S. Kondov , C. -H. Lee , K. H. Leung , C. Liedl , I. Majewska , R. Moszynski , T. Zelevinsky

It is generally recognized that a distinguishing feature of life is its peculiar capability to avoid equilibration. The origin of this capability and its evolution along the timeline of abiogenesis is not yet understood. We propose to study…

Molecular Networks · Quantitative Biology 2016-10-13 Dmitry Yu. Zubarev , Leonardo A. Pachón

We establish that there are properties of quantum many-body dynamics which are efficiently learnable if we are given access to out-of-time-order correlators (OTOCs), but which require exponentially many operations in the system size if we…

Quantum Physics · Physics 2022-08-05 Jordan Cotler , Thomas Schuster , Masoud Mohseni

We propose autoregressive Bayesian semi-parametric models for waiting times between recurrent events. The aim is two-fold: inference on the effect of possibly time-varying covariates on the gap times and clustering of individuals based on…

Applications · Statistics 2016-07-28 Marta Tallarita , Maria De Iorio , Alessandra Guglielmi , James Malone-Lee

Superoscillation is a counterintuitive phenomenon for its mathematical feature of ``faster-than-Fourier", which has allowed novel optical imaging beyond the diffraction limit. In this article, we introduce a superoscillating quantum control…

Quantum Physics · Physics 2025-05-20 Yongcheng Ding , Yiming Pan , Xi Chen

The understanding of how classical dynamics can emerge in closed quantum systems is a problem of fundamental importance. Remarkably, while classical behavior usually arises from coupling to thermal fluctuations or random spectral noise, it…

Quantum Gases · Physics 2013-05-09 Bryce Gadway , Jeremy Reeves , Ludwig Krinner , Dominik Schneble

Quantum processors based on linear arrays of trapped ions have achieved exceptional performance, but scaling to large qubit numbers requires realizing two-dimensional ion arrays as envisioned in the quantum charge-coupled device (QCCD)…

Soft nanosystems are electronic nanodevices, such as suspended carbon nanotubes or molecular junctions, whose transport properties are modulated by soft internal degrees of freedom, for example slow vibrational modes. In this review,…

Mesoscale and Nanoscale Physics · Physics 2016-03-24 A. Nocera , C. A. Perroni , V. Marigliano Ramaglia , V. Cataudella

How does soil pollution affect a plant's circadian clock? Are there any differences between how the clock reacts when exposed to different concentrations of elements of the periodic table? If so, can we characterise these differences? We…

Applications · Statistics 2016-08-01 Jessica K. Hargreaves , Marina I. Knight , Jon W. Pitchford , Seth J. Davis

We consider a general class of translation-invariant systems with a specific category of output nonlinearities motivated by biological sensing. We show that no dynamic output feedback can stabilize this class of systems to an isolated…

Systems and Control · Electrical Eng. & Systems 2025-02-21 Debojyoti Biswas , Eduardo D. Sontag , Noah J. Cowan

The preparation of large, low-entropy, highly coherent ensembles of identical quantum systems is foundational for many studies in quantum metrology, simulation, and information. Here, we realize these features by leveraging the favorable…

Brownian clocks are biomolecular networks that can count time. A paradigmatic example are proteins that go through a cycle thus regulating some oscillatory behaviour in a living system. Typically, such a cycle requires free energy often…

Statistical Mechanics · Physics 2017-01-20 Andre C Barato , Udo Seifert

With potential relevance to biomechanics, an interesting problem in statistical mechanics not previously solved is a binary mechanical model system. Discrete chemical states of proteins are often associated with discrete metastable…

Statistical Mechanics · Physics 2025-01-22 Josh E. Baker

The electron waiting time is the time that passes between two subsequent charge transfers in an electronic conductor. Recently, theories of electron waiting times have been devised for quantum transport in Coulomb-blockade structures and…

Mesoscale and Nanoscale Physics · Physics 2016-06-14 David Dasenbrook , Christian Flindt

Interacting many-body quantum systems show a rich array of physical phenomena and dynamical properties, but are notoriously difficult to study: they are challenging analytically and exponentially difficult to simulate on classical…

How a closed interacting quantum many-body system relaxes and dephases as a function of time is a fundamental question in thermodynamic and statistical physics. In this work, we analyse and observe the persistent temporal fluctuations after…

Statistical Mechanics · Physics 2020-09-22 Harvey B. Kaplan , Lingzhen Guo , Wen Lin Tan , Arinjoy De , Florian Marquardt , Guido Pagano , Christopher Monroe

Many biological systems can sense periodical variations in a stimulus input and produce well-timed, anticipatory responses after the input is removed. Such systems show memory effects for retaining timing information in the stimulus and…

Neurons and Cognition · Quantitative Biology 2015-09-09 Ying-Jen Yang , Chun-Chung Chen , Pik-Yin Lai , C. K. Chan