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We introduce the notion of non-Abelian tensors, and use them to construct a general non-Abelian time evolving block decimation (NA-TEBD) scheme that uses an arbitrary number of Abelian and non-Abelian symmetries. Our approach increases the…
One of the characteristic features of categorical systems theory is that the behavior of systems can be characterized by certain morphisms into them. In other words, behaviors form a representable covariant functor to Set. And more…
A feature of current membrane systems is the fact that objects and membranes are persistent. However, this is not true in the real world. In fact, cells and intracellular proteins have a well-defined lifetime. Inspired from these biological…
A general quantum adiabatic theorem with and without the time-dependent orthogonalization is proven, which can be applied to understand the origin of activation energies in chemical reactions. Further proofs are also developed for the…
We analyze the properties of a quantum system composed of two coherently coupled quantum oscillators and show through simulations that it fulfills the two properties required for reservoir computing: non-linearity and fading memory. We…
Causal ordering of key events in the cell cycle is essential for proper functioning of an organism. Yet, it remains a mystery how a specific temporal program of events is maintained despite ineluctable stochasticity in the biochemical…
The dynamics of time-dependent coupled oscillator model for the charged particle motion subjected to a time-dependent external magnetic field is investigated. We used canonical transformation approach for the classical treatment of the…
The oscillatory dynamics of natural and man-made systems can be disrupted by their time-varying interactions, leading to oscillation quenching phenomena in which the oscillations are suppressed. We introduce a framework for analyzing,…
Spatiotemporal patterns are common in biological systems. For electrically-coupled cells previous studies of pattern formation have mainly used external forcing as the main bifurcation parameter. The purpose of this paper is to show that…
The cosinor model is frequently used to represent the oscillatory behavior of different genes over time. When data are collected from multiple individuals, the cosinor model is estimated with recorded gene expression levels and the 24 hour…
The transversely confined propagating light modes of a nano-photonic optical waveguide or nanofiber can mediate effectively infinite-range forces. We show that for a linear chain of particles trapped within the waveguide's evanescent field,…
Periodically driven quantum systems manifest various non-equilibrium features which are absent at equilibrium. For example, discrete time-translation symmetry can be broken in periodically driven quantum systems leading to an exotic phase…
After a quench in a quantum many-body system, expectation values tend to relax towards long-time averages. However, in any finite-size system, temporal fluctuations remain. It is crucial to study the suppression of these fluctuations with…
We study the spatio-temporal dynamics of the generalized repressilator, a system of coupled repressing genes arranged in a directed ring topology, and give analytical conditions for the emergence of a cascade of unstable periodic orbits…
The quasi-equilibrium approximation is acceptable when molecular interactions are fast enough compared to circuit dynamics, but is no longer allowed when cellular activities are governed by rare events. A typical example is the lactose…
The study of synchronization in populations of coupled biological oscillators is fundamental to many areas of biology to include neuroscience, cardiac dynamics and circadian rhythms. Studying these systems may involve tracking the…
The analytically tractable model employing Quantum Markovian Master Equations, derived by weak coupling procedure and satisfying complete positivity, is proposed to describe a model of molecular battery charged by a non-equilibrium…
Inspired by recent assertions that imply incorrectness of the classical constitutive relationship of time-varying capacitance, energetic and system-theoretic perspectives are invoked that, instead of incorrectness, show incompleteness of…
We consider the time evolution following a quantum quench in spin-1/2 chains. It is well known that local conservation laws constrain the dynamics and, eventually, the stationary behavior of local observables. We show that some widely…
State-of-the-art quantum simulators permit local temporal control of interactions and midcircuit readout. These capabilities open the way towards the exploration of intriguing nonequilibrium phenomena. We illustrate this with a kinetically…