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Epidemics of infectious diseases are an important threat to public health and global economies. Yet, the development of prevention strategies remains a challenging process, as epidemics are non-linear and complex processes. For this reason,…

Machine Learning · Computer Science 2020-03-31 Pieter Libin , Arno Moonens , Timothy Verstraeten , Fabian Perez-Sanjines , Niel Hens , Philippe Lemey , Ann Nowé

The accurate forecasting of infectious epidemic diseases such as influenza is a crucial task undertaken by medical institutions. Although numerous flu forecasting methods and models based mainly on historical flu activity data and online…

Machine Learning · Computer Science 2021-07-08 Taichi Murayama , Shoko Wakamiya , Eiji Aramaki

Health-policy planning requires evidence on the burden that epidemics place on healthcare systems. Multiple, often dependent, datasets provide a noisy and fragmented signal from the unobserved epidemic process including transmission and…

Applications · Statistics 2024-09-11 Alice Corbella , Anne M Presanis , Paul J Birrell , Daniela De Angelis

Infectious diseases are one of the leading causes of morbidity and mortality around the world; thus, forecasting their impact is crucial for planning an effective response strategy. According to the Centers for Disease Control and…

Populations and Evolution · Quantitative Biology 2015-05-18 Kyle S. Hickmann , Geoffrey Fairchild , Reid Priedhorsky , Nicholas Generous , James M. Hyman , Alina Deshpande , Sara Y. Del Valle

Despite the impressive advancements achieved using deep-learning for functional brain activity analysis, the heterogeneity of functional patterns and scarcity of imaging data still pose challenges in tasks such as prediction of future onset…

Image and Video Processing · Electrical Eng. & Systems 2023-12-25 Wenhui Cui , Haleh Akrami , Ganning Zhao , Anand A. Joshi , Richard M. Leahy

Estimating the true prevalence of an epidemic outbreak is a key public health problem. This is challenging because surveillance is usually resource intensive and biased. In the network setting, prior work on cost sensitive disease…

Physics and Society · Physics 2026-01-16 Ritwick Mishra , Abhijin Adiga , Madhav Marathe , S. S. Ravi , Ravi Tandon , Anil Vullikanti

Self-supervision may boost model performance in downstream tasks. However, there is no principled way of selecting the self-supervised objectives that yield the most adaptable models. Here, we study this problem on daily time-series data…

Machine Learning · Computer Science 2021-12-28 Arinbjörn Kolbeinsson , Piyusha Gade , Raghu Kainkaryam , Filip Jankovic , Luca Foschini

This paper presents a predictive model for Influenza-Like-Illness, based on Twitter traffic. We gather data from Twitter based on a set of keywords used in the Influenza wikipedia page, and perform feature selection over all words used in 3…

Social and Information Networks · Computer Science 2021-11-23 Katerina Katsani-Geronymaki , Polyvios Pratikakis

In this manuscript, we use meteorological information in Galicia (Spain) to propose a novel approach to predict the incidence of influenza. Our approach extends the GLS methods in the multivariate framework to functional regression models…

Influenza A is responsible for 290,000 to 650,000 respiratory deaths a year, though this estimate is an improvement from years past due to improvements in sanitation, healthcare practices, and vaccination programs. In this study, we perform…

Machine Learning · Computer Science 2025-07-29 Edmund F. Agyemang , Hansapani Rodrigo , Vincent Agbenyeavu

Among various spatio-temporal prediction tasks, epidemic forecasting plays a critical role in public health management. Recent studies have demonstrated the strong potential of spatio-temporal graph neural networks (STGNNs) in extracting…

Machine Learning · Computer Science 2025-12-30 Yufan Zheng , Wei Jiang , Tong Chen , Alexander Zhou , Nguyen Quoc Viet Hung , Choujun Zhan , Hongzhi Yin

Parameter estimation and associated uncertainty quantification is an important problem in dynamical systems characterized by ordinary differential equation (ODE) models that are often nonlinear. Typically, such models have analytically…

Computation · Statistics 2024-03-26 Wai Meng Kwok , Sarat Chandra Dass , George Streftaris

Forecasting infectious disease outbreaks is hard. Forecasting emerging infectious diseases with limited historical data is even harder. In this paper, we investigate ways to improve emerging infectious disease forecasting under operational…

The abundance of modern health data provides many opportunities for the use of machine learning techniques to build better statistical models to improve clinical decision making. Predicting time-to-event distributions, also known as…

Machine Learning · Statistics 2020-12-15 Zidi Xiu , Chenyang Tao , Benjamin A. Goldstein , Ricardo Henao

Over the last ten years, the US Centers for Disease Control and Prevention (CDC) has organized an annual influenza forecasting challenge with the motivation that accurate probabilistic forecasts could improve situational awareness and yield…

Machine Learning · Statistics 2024-07-30 Evan L. Ray , Yijin Wang , Russell D. Wolfinger , Nicholas G. Reich

While digital trace data from sources like search engines hold enormous potential for tracking and understanding human behavior, these streams of data lack information about the actual experiences of those individuals generating the data.…

While deep neural networks (DNNs) based personalized federated learning (PFL) is demanding for addressing data heterogeneity and shows promising performance, existing methods for federated learning (FL) suffer from efficient systematic…

Machine Learning · Computer Science 2025-05-08 Hui Chen , Hengyu Liu , Zhangkai Wu , Xuhui Fan , Longbing Cao

Seasonal influenza is a sometimes surprisingly impactful disease, causing thousands of deaths per year along with much additional morbidity. Timely knowledge of the outbreak state is valuable for managing an effective response. The current…

Populations and Evolution · Quantitative Biology 2020-07-01 Reid Priedhorsky , Ashlynn R. Daughton , Martha Barnard , Fiona O'Connell , Dave Osthus

Many uncontrollable disease outbreaks of the past exposed several vulnerabilities in the healthcare systems worldwide. While advancements in technology assisted in the rapid creation of the vaccinations, there needs to be a pressing focus…

Machine Learning · Computer Science 2024-10-29 Chaitya Shah , Kashish Gandhi , Javal Shah , Kreena Shah , Nilesh Patil , Kiran Bhowmick

Early detection and modeling of a contagious epidemic can provide important guidance about quelling the contagion, controlling its spread, or the effective design of countermeasures. A topic of recent interest has been to design social…

Social and Information Networks · Computer Science 2016-03-09 Huijuan Shao , K. S. M. Tozammel Hossain , Hao Wu , Maleq Khan , Anil Vullikanti , B. Aditya Prakash , Madhav Marathe , Naren Ramakrishnan