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Effective recognition of foreign antigens by the adaptive immune system relies on T cells being activated by antigen-presenting cells (APCs) in lymph nodes. Here, diffusing T cells may encounter cognate APCs that present matching antigen…

Quantitative Methods · Quantitative Biology 2025-10-03 Tony Wong , Ikchang Cho , Maria R. D'Orsogna , Tom Chou

Actin is a globular protein which forms long polar filaments in the eukaryotic cytoskeleton. Actin networks play a key role in cell mechanics and cell motility. They have also been implicated in information transmission and processing,…

Emerging Technologies · Computer Science 2015-07-01 Stefano Siccardi , Jack A. Tuszynski , Andrew Adamatzky

Biological networks, such as cellular metabolic pathways or networks of corticocortical connections in the brain, are intricately organized, yet remarkably robust toward structural damage. Whereas many studies have investigated specific…

Neurons and Cognition · Quantitative Biology 2007-05-23 Marcus Kaiser , Claus C. Hilgetag

We study the adsorption of chlorine on the Ag(111) surface with full potential gradient corrected density functional calculations. When considering a root3 x root3 R30degree pattern, we find that the fcc hollow is the most favorable…

Materials Science · Physics 2009-11-07 K. Doll , N. M. Harrison

Maintaining multiple wireless connections is a promising solution to boost capacity in fifth-generation (5G) networks, where user equipment is able to consume radio resources of several serving cells simultaneously and potentially aggregate…

Networking and Internet Architecture · Computer Science 2016-09-29 Maria A. Lema , Enric Pardo , Olga Galinina , Sergey Andreev , Mischa Dohler

We analyse a minimal model for the primary response in the adaptive immune system comprising three different players: antigens, T and B cells. We assume B-T interactions to be diluted and sampled locally from heterogeneous degree…

Cell Behavior · Quantitative Biology 2015-09-30 Silvia Bartolucci , Alessia Annibale

Dendritic cells are antigen presenting cells that provide a vital link between the innate and adaptive immune system. Research into this family of cells has revealed that they perform the role of coordinating T-cell based immune responses,…

Artificial Intelligence · Computer Science 2010-07-05 Julie Greensmith , Uwe Aickelin , Steve Cayzer

Biomolecular self-assembly spatially segregates proteins with a limited number of binding sites (valence) into condensates that coexist with a dilute phase. We develop a many-body lattice model for a three-component system of proteins with…

Soft Condensed Matter · Physics 2022-01-13 Saroj Kumar Nandi , Daniel Österle , Meta Heidenreich , Emmanuel D. Levy , Samuel A. Safran

Using self-consistent calculations based on Non-Equilibrium Green's Function (NEGF) formalism, the origin of negative differential resistance (NDR) in molecular junctions and quantum wires is investigated. Coupling of the molecule to…

Mesoscale and Nanoscale Physics · Physics 2008-08-21 Hosein Cheraghchi , Keivan Esfarjani

We derive the boundary condition for a subdiffusive particle interacting with a reactive boundary with finite reaction rate. Molecular crowding conditions, that are found to cause subdiffusion of larger molecules in biological cells, are…

Statistical Mechanics · Physics 2008-06-02 Michael A. Lomholt , Irwin M. Zaid , Ralf Metzler

A new type of peculiarity -- a splitting or asymmetry of strong absorption lines, is found in the optical spectra of selected post-AGB stars with C-rich circumstellar envelopes. The effect is maximal in BaII lines whose profile is split…

Solar and Stellar Astrophysics · Physics 2016-04-13 V. G. Klochkova

The formation of amyloid fibrils comprising amyloid $\beta$ (A$\beta$) peptides is associated with the pathology of Alzheimer's disease. In this study, we theoretically investigated the A$\beta$ structure at the fibril end using the density…

Biological Physics · Physics 2025-05-15 Yasuhiro Oishi , Motoharu Kitatani , Kichitaro Nakajima , Hirotsugu Ogi , Koichi Kusakabe

Tissue boundaries pattern embryos, suppress tumours, and provide directional cues. Tissue boundaries are associated with supracellular cables formed by actin and the molecular motor non-muscle myosin II. Actomyosin cables generate tension…

A mathematical model based on classical species balance equation has been developed to explain the experimental observation on E.Coli cell-killing in a batch reactor and to extract information on cell-killing mechanism. Maximum likelihood…

Chemical Physics · Physics 2023-07-12 Vivekananda Bal

Cell membranes are studded with protrusions that were thoroughly analyzed with electron microscopy. However, the nanometer-scale three-dimensional motions generated by cell membranes to fit the topography of foreign surfaces and initiate…

Biological Physics · Physics 2008-09-04 Anne Pierres , Anne-Marie Benoliel , Dominique Touchard , Pierre Bongrand

A broad range of membrane proteins display anomalous diffusion on the cell surface. Different methods provide evidence for obstructed subdiffusion and diffusion on a fractal space, but the underlying structure inducing anomalous diffusion…

Biological Physics · Physics 2017-03-15 Sanaz Sadegh , Jenny L. Higgins , Patrick C. Mannion , Michael M. Tamkun , Diego Krapf

A key challenge in Molecular Communications (MC) is low data transmission rates, which can be addressed by channel multiplexing techniques. One way to achieve channel multiplexing in MC is to leverage the diversity of different molecule…

Emerging Technologies · Computer Science 2023-05-03 Ahmet R. Emirdagi , M. Serkan Kopuzlu , M. Okan Araz , Murat Kuscu

Electron accumulation in interatomic regions is a fundamental quantum phenomenon dictating chemical bonding and material properties, yet its origin remains elusive across disciplines. Here, we report a quantum accumulation effect --…

Materials Science · Physics 2026-04-15 Qiang Xu , Zhao Liu , Yanming Ma

We report on transport and tunneling measurements performed on ultra-thin Pb/Ag (strong coupled superconductor/normal metal) multilayers evaporated by quench condensation. The critical temperature and energy gap of the heterostructures…

Superconductivity · Physics 2011-01-12 O. Bourgeois , A. Frydman , R. C. Dynes

According to Jerne's idiotypic network hypothesis, the adaptive immune system is regulated by interactions between the variable regions of antibodies, B cells, and T cells.1 The symmetrical immune network theory2,3 is based on Jerne's…

Cell Behavior · Quantitative Biology 2014-03-07 Earnest Leung , Geoffrey W. Hoffmann