English

Subdiffusion and weak ergodicity breaking in the presence of a reactive boundary

Statistical Mechanics 2008-06-02 v2 Soft Condensed Matter

Abstract

We derive the boundary condition for a subdiffusive particle interacting with a reactive boundary with finite reaction rate. Molecular crowding conditions, that are found to cause subdiffusion of larger molecules in biological cells, are shown to effect long-tailed distributions with identical exponent for both the unbinding times from the boundary to the bulk and the rebinding times from the bulk. This causes a weak ergodicity breaking: typically, an individual particle either stays bound or remains in the bulk for very long times. We discuss why this may be beneficial for in vivo gene regulation by DNA-binding proteins, whose typical concentrations are nanomolar

Keywords

Cite

@article{arxiv.0704.1769,
  title  = {Subdiffusion and weak ergodicity breaking in the presence of a reactive boundary},
  author = {Michael A. Lomholt and Irwin M. Zaid and Ralf Metzler},
  journal= {arXiv preprint arXiv:0704.1769},
  year   = {2008}
}

Comments

4 pages, 1 figure, REVTeX4, accepted to Phys Rev Lett, some typos corrected