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The most fundamental problem considered in algorithms for text processing is pattern matching: given a pattern $p$ of length $m$ and a text $t$ of length $n$, does $p$ occur in $t$? Multiple versions of this basic question have been…
Given an LZW/LZ78 compressed text, we want to find an approximate occurrence of a given pattern of length m. The goal is to achieve time complexity depending on the size n of the compressed representation of the text instead of its length.…
A ubiquitous problem in pattern recognition is that of matching an observed time-evolving pattern (or signal) to a gold standard in order to recognize or characterize the meaning of a dynamic phenomenon. Examples include matching sequences…
The Dynamic Time Warping (DTW) distance is a popular measure of similarity for a variety of sequence data. For comparing polygonal curves $\pi, \sigma$ in $\mathbb{R}^d$, it provides a robust, outlier-insensitive alternative to the…
This paper considers an optimization problem for a dynamical system whose evolution depends on a collection of binary decision variables. We develop scalable approximation algorithms with provable suboptimality bounds to provide…
The $c$-approximate Near Neighbor problem in high dimensional spaces has been mainly addressed by Locality Sensitive Hashing (LSH), which offers polynomial dependence on the dimension, query time sublinear in the size of the dataset, and…
Embedding image features into a binary Hamming space can improve both the speed and accuracy of large-scale query-by-example image retrieval systems. Supervised hashing aims to map the original features to compact binary codes in a manner…
Covers being one of the most popular form of regularities in strings, have drawn much attention over time. In this paper, we focus on the problem of linear time inference of strings from cover arrays using the least sized alphabet possible.…
The following problem is considered. A Turing machine $M$, that accepts a string of fixed length $t$ as input, runs for a time not exceeding a fixed value $n$ and is guaranteed to produce a binary output, is given. It's required to find a…
The problem of storing a set of strings --- a string dictionary --- in compact form appears naturally in many cases. While classically it has represented a small part of the whole data to be processed (e.g., for Natural Language processing…
Dot plots are a standard method for local comparison of biological sequences. In a dot plot, a substring to substring distance is computed for all pairs of fixed-size windows in the input strings. Commonly, the Hamming distance is used…
This paper proposes a novel distributed optimization framework that addresses time-varying optimization problems without requiring explicit derivative information of the objective functions. Traditional distributed methods often rely on…
While several classes of integer linear optimization problems are known to be solvable in polynomial time, far fewer tractability results exist for integer nonlinear optimization. In this work, we narrow this gap by identifying a broad…
In this article we study a broad class of integer programming problems in variable dimension. We show that these so-termed {\em n-fold integer programming problems} are polynomial time solvable. Our proof involves two heavy ingredients…
We study two fundamental problems in communication, Document Exchange (DE) and Error Correcting Code (ECC). In the first problem, two parties hold two strings, and one party tries to learn the other party's string through communication. In…
This paper studies a multi-armed bandit (MAB) version of the range-searching problem. In its basic form, range searching considers as input a set of points (on the real line) and a collection of (real) intervals. Here, with each specified…
In recent years, there has been an increasing demand on efficient algorithms for large scale change point detection problems. To this end, we propose seeded binary segmentation, an approach relying on a deterministic construction of…
The Word Mover's Distance (WMD) proposed by Kusner et al. is a distance between documents that takes advantage of semantic relations among words that are captured by their embeddings. This distance proved to be quite effective, obtaining…
The Dynamic Time Warping (DTW) is a popular similarity measure between time series. The DTW fails to satisfy the triangle inequality and its computation requires quadratic time. Hence, to find closest neighbors quickly, we use bounding…
In this work, we propose an optimization framework for estimating a sparse robust one-dimensional subspace. Our objective is to minimize both the representation error and the penalty, in terms of the l1-norm criterion. Given that the…