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String matching is the problem of finding all the occurrences of a pattern in a text. We propose improved versions of the fast family of string matching algorithms based on hashing $q$-grams. The improvement consists of considering minimal…
We introduce a parallel machine scheduling problem in which the processing times of jobs are not given in advance but are determined by a system of linear constraints. The objective is to minimize the makespan, i.e., the maximum job…
We present a new general method for performing basic arithmetic in the finite field~$\mathbb{F}_p$ for any prime $p>2$ by using traditional binary operations over~$\mathbb{F}_2$. Our new approach is efficient and competitive with current…
A weighted string over an alphabet of size $\sigma$ is a string in which a set of letters may occur at each position with respective occurrence probabilities. Weighted strings, also known as position weight matrices or uncertain sequences,…
Building upon findings in computational model of handwriting learning and execution, we introduce the concept of stability to explain the difference between the actual movements performed during multiple execution of the subject's…
An elastic-degenerate (ED) string is a sequence of $n$ sets of strings of total length $N$, which was recently proposed to model a set of similar sequences. The ED string matching (EDSM) problem is to find all occurrences of a pattern of…
Subset Sum is a classical optimization problem taught to undergraduates as an example of an NP-hard problem, which is amenable to dynamic programming, yielding polynomial running time if the input numbers are relatively small. Formally,…
Given strings $P$ and $Q$ the (exact) string matching problem is to find all positions of substrings in $Q$ matching $P$. The classical Knuth-Morris-Pratt algorithm [SIAM J. Comput., 1977] solves the string matching problem in linear time…
In this paper it is shown that given a sufficient number of (noisy) random binary linear equations, the Learning from Parity with Noise (LPN) problem can be solved in essentially cube root time in the number of unknowns. The techniques used…
We study the fundamental problem of approximating the edit distance of two strings. After an extensive line of research led to the development of a constant-factor approximation algorithm in almost-linear time, recent years have witnessed a…
Binary jumbled pattern matching asks to preprocess a binary string $S$ in order to answer queries $(i,j)$ which ask for a substring of $S$ that is of length $i$ and has exactly $j$ 1-bits. This problem naturally generalizes to…
We study the following combinatorial version of the Slepian-Wolf coding scheme. Two isolated Senders are given binary strings $X$ and $Y$ respectively; the length of each string is equal to $n$, and the Hamming distance between the strings…
When eating spaghetti, one should have the sauce and noodles mixed instead of eating them separately. We argue that also in string solving, word equations and regular constraints are better mixed together than approached separately as in…
In ill-posed dynamic inverse problems expected spatial features and temporal correlation between frames can be leveraged to improve the quality of the computed solution, in particular when the available data are limited and the…
We consider the problem of querying a string (or, a database) of length $N$ bits to determine all the locations where a substring (query) of length $M$ appears either exactly or is within a Hamming distance of $K$ from the query. We assume…
We present a general approach to the problem of determining tight asymptotic lower bounds for generalized central moments of the optimal alignment score of two independent sequences of i.i.d. random variables. At first, these are obtained…
This paper investigates the optimal signal detection problem with a particular interest in large-scale multiple-input multiple-output (MIMO) systems. The problem is NP-hard and can be solved optimally by searching the shortest path on the…
Parameterized complexity enables the practical solution of generally intractable NP-hard problems when certain parameters are small, making it particularly useful in real-world applications. The study of string problems in this framework…
Most existing distance metric learning methods assume perfect side information that is usually given in pairwise or triplet constraints. Instead, in many real-world applications, the constraints are derived from side information, such as…
In a recent paper, Brusco, K\"ohn and Steinley [Ann. Oper. Res. 206:611-626 (2013)] conjecture that the 2 bins special case of the one-dimensional minimax bin-packing problem with bin size constraints might be solvable in polynomial time.…