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Fluorescent calcium imaging provides a potentially powerful tool for inferring connectivity in neural circuits with up to thousands of neurons. However, a key challenge in using calcium imaging for connectivity detection is that current…

Information Theory · Computer Science 2014-09-05 Alyson K. Fletcher , Sundeep Rangan

Glutamatergic gliotransmission, that is the release of glutamate from perisynaptic astrocyte processes in an activity-dependent manner, has emerged as a potentially crucial signaling pathway for regulation of synaptic plasticity, yet its…

Neurons and Cognition · Quantitative Biology 2016-08-15 Maurizio De Pittà , Nicolas Brunel

Synapses change on multiple timescales, ranging from milliseconds to minutes, due to a combination of both short- and long-term plasticity. Here we develop an extension of the common Generalized Linear Model to infer both short- and…

Neurons and Cognition · Quantitative Biology 2022-08-15 Ganchao Wei , Ian H. Stevenson

Synaptic connections in neuronal circuits are modulated by pre- and post-synaptic spiking activity. Heuristic models of this process of synaptic plasticity can provide excellent fits to results from in-vitro experiments in which pre- and…

Neurons and Cognition · Quantitative Biology 2022-07-14 Federico Devalle , Alex Roxin

Traditional top-down robotic design often lacks the adaptability needed to handle real-world complexities, prompting the need for more flexible approaches. Therefore, this study introduces a novel cellular plasticity model tailored for…

Robotics · Computer Science 2024-08-13 Trevor R. Smith , Thomas J. Smith , Nicholas S. Szczecinski , Sergiy Yakovenko , Yu Gu

Amorphous calcium carbonate (ACC) is an important precursor for biomineralisation in marine organisms. Among the key outstanding problems regarding ACC are how best to understand its structure and how to rationalise its metastability as an…

In this letter we present the results of a simple model for intercellular communication via calcium oscillations, motivated in part by a recent experimental study. The model describes two cells (a "donor" and "sensor") whose intracellular…

Biological Physics · Physics 2007-05-23 M. E. Gracheva , J. D. Gunton

Biological neurons and their in-silico emulations for neuromorphic artificial intelligence (AI) use extraordinarily energy-efficient mechanisms, such as spike-based communication and local synaptic plasticity. It remains unclear whether…

Neural and Evolutionary Computing · Computer Science 2021-06-17 Timoleon Moraitis , Abu Sebastian , Evangelos Eleftheriou

Replicating the computational functionalities and performances of the brain remains one of the biggest challenges for the future of information and communication technologies. Such an ambitious goal requires research efforts from the…

Biological Physics · Physics 2015-05-20 Selina La Barbera , Dominique Vuillaume , Fabien Alibart

Osteoclastic resorption of bone plays a central role in both osteoporosis and bone metastasis. A reliable in vitro assay that simulates osteoclastic resorption in vivo would significantly speed up the process of devel-oping effective…

Tissues and Organs · Quantitative Biology 2021-04-13 Sijia Chen , Qiong Wang , Felipe Eltit , Yubin Guo , Michael Cox , Rizhi Wang

We analyze continuous Hopfield associative memories augmented by additional, rapid short-term associative synaptic plasticity. Through the cavity method, we determine the boundary between the retrieval and forgetting, or spin-glass phase,…

Neurons and Cognition · Quantitative Biology 2026-02-10 Martina Del Gaudio , Federico Ghimenti , Surya Ganguli

Synaptic plasticity is a key component of neuronal dynamics, describing the process by which the connections between neurons change in response to experiences. In this study, we extend a network model of $\theta$-neuron oscillators to…

Neurons and Cognition · Quantitative Biology 2024-08-01 Niamh Fennelly , Alannah Neff , Renaud Lambiotte , Andrew Keane , Áine Byrne

The paper presents a 1D2V electrostatic PIC model with a drift-kinetic description of all particle types aiming at simulating classical longitudinal plasma transport in axially symmetric open traps. The model generalizes the semi-implicit…

Plasma Physics · Physics 2026-02-03 V. V. Glinskiy , I. V. Timofeev , V. V. Prikhodko

The phenomenon of mutual coupling in continuous aperture arrays (CAPAs) is studied. First, a general physical model for the phenomenon that accounts for both polarization and surface dissipation losses is developed. Then, the unipolarized…

Information Theory · Computer Science 2026-04-03 Zhaolin Wang , Kuranage Roche Rayan Ranasinghe , Giuseppe Thadeu Freitas de Abreu , Yuanwei Liu

In neuroscience, learning and memory are usually associated to long-term changes of neuronal connectivity. In this context, synaptic plasticity refers to the set of mechanisms driving the dynamics of neuronal connections, called {\em…

Probability · Mathematics 2021-06-10 Philippe Robert , Gaetan Vignoud

Normative models of synaptic plasticity use a combination of mathematics and computational simulations to arrive at predictions of behavioral and network-level adaptive phenomena. In recent years, there has been an explosion of theoretical…

Neurons and Cognition · Quantitative Biology 2023-08-10 Colin Bredenberg , Cristina Savin

The distinct timescales of synaptic plasticity and neural activity dynamics play an important role in the brain's learning and memory systems. Activity-dependent plasticity reshapes neural circuit architecture, determining spontaneous and…

Neurons and Cognition · Quantitative Biology 2023-06-30 Heather L Cihak , Zachary P Kilpatrick

We consider a fully-connected network of leaky integrate-and-fire neurons with spike-timing-dependent plasticity. The plasticity is controlled by a parameter representing the expected weight of a synapse between neurons that are firing…

Neurons and Cognition · Quantitative Biology 2011-09-23 Chun-Chung Chen , David Jasnow

Miniaturized calcium imaging is an emerging neural recording technique that has been widely used for monitoring neural activity on a large scale at a specific brain region of rats or mice. Most existing calcium-image analysis pipelines…

Image and Video Processing · Electrical Eng. & Systems 2023-04-18 Zhe Chen , Garrett J. Blair , Chengdi Cao , Jim Zhou , Daniel Aharoni , Peyman Golshani , Hugh T. Blair , Jason Cong

A growing body of work underlines striking similarities between biological neural networks and recurrent, binary neural networks. A relatively smaller body of work, however, discusses similarities between learning dynamics employed in deep…

Neural and Evolutionary Computing · Computer Science 2020-05-22 Jacques Kaiser , Hesham Mostafa , Emre Neftci