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The genetic diversity of a species is shaped by its recent evolutionary history and can be used to infer demographic events or selective sweeps. Most inference methods are based on the null hypothesis that natural selection is a weak or…

Populations and Evolution · Quantitative Biology 2013-03-05 Richard A. Neher , Oskar Hallatschek

Classification standards such as the Mammal Species of the World (MSW) aim to unify name usages at the global scale, but may nevertheless experience significant levels of taxonomic change from one edition to the next. This circumstance…

Populations and Evolution · Quantitative Biology 2014-12-12 Nico M. Franz , Naomi M. Pier , DeAnn M. Reeder , Mingmin Chen , Shizhuo Yu , Parisa Kianmajd , Shawn Bowers , Bertram Ludaescher

Secondary forests now dominate tropical landscapes and play a crucial role in achieving COP15 conservation objectives. This study develops a replicable national approach to identifying and characterising forest ecosystems, with a focus on…

Intra-African conflicts during the collapse of the kingdom of Oyo from 1817 to 1836 resulted in the enslavement of an estimated 121,000 people who were then transported to coastal ports via complex trade networks and loaded onto slave ships…

Applications · Statistics 2020-08-27 Ashton Wiens , Henry B. Lovejoy , Zachary Mullen , Eric Vance

We investigate the consequences of adopting the criteria used by the state of California, as described by Myers et al. (2011), for conducting familial searches. We carried out a simulation study of randomly generated profiles of related and…

Genomics · Quantitative Biology 2015-06-15 Rori V. Rohlfs , Erin Murphy , Yun S. Song , Montgomery Slatkin

Can a regulated, legal market for wildlife products protect species threatened by poaching? It is one of the most controversial ideas in biodiversity conservation. Perhaps the most convincing reason for legalizing wildlife trade is that…

Populations and Evolution · Quantitative Biology 2021-03-24 Matthew H. Holden , Jakeb Lockyer

Based on the astrometry and photometry in Gaia DR3, we identified new nearby white dwarfs and validated those that had been missed from recent white dwarf catalogues despite being previously documented. To ensure the reliability of their…

Solar and Stellar Astrophysics · Physics 2024-01-04 Alex Golovin , Sabine Reffert , Akash Vani , Ulrich Bastian , Stefan Jordan , Andreas Just

In a mouse intercross with more than 500 animals and genome-wide gene expression data on six tissues, we identified a high proportion (18%) of sample mix-ups in the genotype data. Local expression quantitative trait loci (eQTL; genetic loci…

Living at high-altitude is one of the most difficult challenges that humans had to cope with during their evolution. Whereas several genomic studies have revealed some of the genetic bases of adaptations in Tibetan, Andean and Ethiopian…

Populations and Evolution · Quantitative Biology 2014-09-29 Matthieu Foll , Oscar E. Gaggiotti , Josephine T. Daub , Alexandra Vatsiou , Laurent Excoffier

Quantifying interaction strength between species is of interest in food web studies for understanding population dynamics. Theory has run ahead of experiment in solving equations describing ecological systems (the Lotka-Volterra equations,…

Populations and Evolution · Quantitative Biology 2013-05-07 Joshua M. Courtney , Amy C. Courtney , Michael W. Courtney

The diversity of the arthropod fauna from the pacific coast in southern Mexico was investigated in order to study and compare the biodiversity of two different regions. One is located within the Biosphere reserve "La encrucijada" and the…

Populations and Evolution · Quantitative Biology 2014-05-02 Solórzano Kraemer Mónica Morayma , Kraemer Atahualpa S. , Stebner Frauke

Climate change, deforestation, and biodiversity loss are calling for innovative approaches to effective reforestation and afforestation. This paper explores the integration of artificial intelligence and remote sensing technologies for…

General Economics · Economics 2024-10-15 Seymur Garibov , Wadim Strielkowski

DNA samples crime cases analysed in forensic genetics, frequently contain DNA from multiple contributors. These occur as convolutions of the DNA profiles of the individual contributors to the DNA sample. Thus, in cases where one or more of…

Computation · Statistics 2020-12-02 Søren B. Vilsen , Torben Tvedebrink , Poul Svante Eriksen

Many aspects of the historical relationships between populations in a species are reflected in genetic data. Inferring these relationships from genetic data, however, remains a challenging task. In this paper, we present a statistical model…

Populations and Evolution · Quantitative Biology 2012-11-20 Joseph K. Pickrell , Jonathan K. Pritchard

The Moran process is a classic stochastic process that models the rise and takeover of novel traits in network-structured populations. In biological terms, a set of mutants, each with fitness $m\in(0,\infty)$ invade a population of…

Data Structures and Algorithms · Computer Science 2024-05-14 Petros Petsinis , Andreas Pavlogiannis , Josef Tkadlec , Panagiotis Karras

Toxicity evaluation of chemical compounds has traditionally relied on animal experiments;however, the demand for non-animal-based prediction methods for toxicology of compounds is increasing worldwide. Our aim was to provide a…

Applications · Statistics 2023-02-06 Jun-ichi Takeshita , Akinobu Toyoda , Hidenori Tani , Yasunori Endo , Sadaaki Miyamoto

As the first step in an investigation of the origin of genetic information, we study how some species of molecules are preserved over cell generations and play an important role in controlling the growth of a cell. We consider a model…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 Kunihiko Kaneko , Tetsuya Yomo

Freshwater Unionid bivalves have recently faced ecological upheaval through pollution, barriers to dispersal, human harvesting, and changes in fish-host prevalence. Currently, over 70% of species are threatened, endangered or extinct. To…

Populations and Evolution · Quantitative Biology 2022-11-18 Rebekah L. Rogers , Stephanie L. Grizzard , Jeffrey T. Garner

In order to empirically assess the effect of actual seed sampling strategy on genetic diversity of holm oak (Quercus ilex) forestations in Sicily, we have analysed the genetic composition of two seedling lots (nursery stock and plantation)…

Populations and Evolution · Quantitative Biology 2009-04-09 Concetta Burgarella , Miguel Navascués , Álvaro Soto , Ángel Lora , Silvio Fici

Despite loss of natural habitat due to development and urbanization, certain species like the Rhesus macaque have adapted well to the urban environment. With abundant food and no predators, macaque populations have increased substantially…

Computer Vision and Pattern Recognition · Computer Science 2018-11-14 Ankita Shukla , Gullal Singh Cheema , Saket Anand , Qamar Qureshi , Yadvendradev Jhala
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