Related papers: Faster parameterized algorithm for Bicluter Editin…

Computing the edit distance of two strings is one of the most basic problems in computer science and combinatorial optimization. Tree edit distance is a natural generalization of edit distance in which the task is to compute a measure of…

Graph edit distance (GED) is a powerful and flexible graph matching paradigm that can be used to address different tasks in structural pattern recognition, machine learning, and data mining. In this paper, some new binary linear programming…

We study a broad class of graph partitioning problems, where each problem is specified by a graph $G=(V,E)$, and parameters $k$ and $p$. We seek a subset $U\subseteq V$ of size $k$, such that $\alpha_1m_1 + \alpha_2m_2$ is at most (or at…

Let ${\cal G}$ be a minor-closed graph class and let $G$ be an $n$-vertex graph. We say that $G$ is a $k$-apex of ${\cal G}$ if $G$ contains a set $S$ of at most $k$ vertices such that $G\setminus S$ belongs to ${\cal G}$. Our first result…

Bipartite graphs are a prevalent modeling tool for real-world networks, capturing interactions between vertices of two different types. Within this framework, bicliques emerge as crucial structures when studying dense subgraphs: they are…

For every integer $g$, isomorphism of graphs of Euler genus at most $g$ can be decided in linear time. This improves previously known algorithms whose time complexity is $n^{O(g)}$ (shown in early 1980's), and in fact, this is the first…

In this work, we study the Biclique-Free Vertex Deletion problem: Given a graph $G$ and integers $k$ and $i \le j$, find a set of at most $k$ vertices that intersects every (not necessarily induced) biclique $K_{i, j}$ in $G$. This is a…

We consider the approximate pattern matching problem under the edit distance. Given a text $T$ of length $n$, a pattern $P$ of length $m$, and a threshold $k$, the task is to find the starting positions of all substrings of $T$ that can be…

The Maximum Induced Matching problem asks to find the maximum $k$ such that, given a graph $G=(V,E)$, can we find a subset of vertices $S$ of size $k$ for which every vertices $v$ in the induced graph $G[S]$ has exactly degree $1$. In this…

We show how to compute the edit distance between two strings of length n up to a factor of 2^{\~O(sqrt(log n))} in n^(1+o(1)) time. This is the first sub-polynomial approximation algorithm for this problem that runs in near-linear time,…

Let U be a universe on n elements, let k be a positive integer, and let F be a family of (implicitly defined) subsets of U. We consider the problems of partitioning U into k sets from F, covering U with k sets from F, and packing k…

Let G be an input graph with n vertices and m edges and let k be a fixed parameter. We provide a single exponential FPT algorithm with running time O(c^kn(n+m)), c= min {18,k} that turns graph G into an interval graph by deleting at most k…

In the graph clustering problem with a planted solution, the input is a graph on $n$ vertices partitioned into $k$ clusters, and the task is to infer the clusters from graph structure. A standard assumption is that clusters induce…

The input to the Multiway Cut problem is a weighted undirected graph, with nonnegative edge weights, and $k$ designated terminals. The goal is to partition the vertices of the graph into $k$ parts, each containing exactly one of the…

In this paper, we consider three hitting problems on a disk intersection graph: Triangle Hitting Set, Feedback Vertex Set, and Odd Cycle Transversal. Given a disk intersection graph $G$, our goal is to compute a set of vertices hitting all…

Given an integer k, we consider the parallel k-stripping process applied to a hypergraph H: removing all vertices with degree less than k in each iteration until reaching the k-core of H. Take H as H_r(n,m): a random r-uniform hypergraph on…

Let ${\mathcal C}$ be a proper minor-closed family of graphs. We present a randomized algorithm that given a graph $G \in {\mathcal C}$ with $n$ vertices, finds a simple cycle of size $k$ in $G$ (if exists) in $2^{O(k)}n$ time. The…

The $d$-bounded-degree vertex deletion problem, to delete at most $k$ vertices in a given graph to make the maximum degree of the remaining graph at most $d$, finds applications in computational biology, social network analysis and some…

In this work, we initiate the complexity study of Biclique Contraction and Balanced Biclique Contraction. In these problems, given as input a graph G and an integer k, the objective is to determine whether one can contract at most k edges…

Given two graphs $H$ and $G$, the Subgraph Isomorphism problem asks if $H$ is isomorphic to a subgraph of $G$. While NP-hard in general, algorithms exist for various parameterized versions of the problem: for example, the problem can be…