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The outcome of a functional genomics pipeline is usually a partial list of genomic features, ranked by their relevance in modelling biological phenotype in terms of a classification or regression model. Due to resampling protocols or just…

Machine Learning · Statistics 2012-08-20 Giuseppe Jurman , Samantha Riccadonna , Roberto Visintainer , Cesare Furlanello

Segmentation of images holds an important position in the area of image processing. It becomes more important whi le typically dealing with medical images where presurgery and post surgery decisions are required for the purpose of…

Computer Vision and Pattern Recognition · Computer Science 2010-05-25 Mrigank Rajya , Sonal Rewri , Swati Sheoran

Machine learning models have utilized semantic features, deep features, or both to assess lung nodule malignancy. However, their reliance on manual annotation during inference, limited interpretability, and sensitivity to imaging variations…

Computer Vision and Pattern Recognition · Computer Science 2025-11-04 Luoting Zhuang , Seyed Mohammad Hossein Tabatabaei , Ramin Salehi-Rad , Linh M. Tran , Denise R. Aberle , Ashley E. Prosper , William Hsu

Background: As an important branch of machine learning pipelines in medical imaging, radiomics faces two major challenges namely reproducibility and accessibility. In this work, we introduce open-radiomics, a set of radiomics datasets along…

Quantitative Methods · Quantitative Biology 2025-03-04 Khashayar Namdar , Matthias W. Wagner , Birgit B. Ertl-Wagner , Farzad Khalvati

Background: Multiparametric breast MRI data might improve tumor diagnostics, characterization, and treatment planning. Accurate alignment and delineation of images acquired at different field strengths such as 3T and 7T, remain challenging…

Image and Video Processing · Electrical Eng. & Systems 2025-01-24 Muhammad Shahkar Khan , Haider Ali , Laura Villazan Garcia , Noor Badshah , Siegfried Trattnig , Florian Schwarzhans , Ramona Woitek , Olgica Zaric

Brain tumor segmentation is crucial for diagnosis and treatment planning, yet challenges such as class imbalance and limited model generalization continue to hinder progress. This work presents a reproducible evaluation of U-Net…

Computer Vision and Pattern Recognition · Computer Science 2025-10-13 Saumya B

Lung cancer remains the leading cause of cancer-related mortality worldwide, with survival strongly dependent on early detection. Standard-dose computed tomography (CT) screening using the Lung Imaging Reporting and Data System (Lung-RADS)…

Medical image segmentation is a challenging task, particularly due to inter- and intra-observer variability, even between medical experts. In this paper, we propose a novel model, called Probabilistic Inter-Observer and iNtra-Observer…

Image and Video Processing · Electrical Eng. & Systems 2023-07-24 Arne Schmidt , Pablo Morales-Álvarez , Rafael Molina

Volumetric medical segmentation models have achieved significant success on organ and tumor-based segmentation tasks in recent years. However, their vulnerability to adversarial attacks remains largely unexplored, raising serious concerns…

Image and Video Processing · Electrical Eng. & Systems 2024-09-04 Hashmat Shadab Malik , Numan Saeed , Asif Hanif , Muzammal Naseer , Mohammad Yaqub , Salman Khan , Fahad Shahbaz Khan

The Random Walks (RW) algorithm is one of the most e - cient and easy-to-use probabilistic segmentation methods. By combining contrast terms with prior terms, it provides accurate segmentations of medical images in a fully automated manner.…

Computer Vision and Pattern Recognition · Computer Science 2013-06-06 Pierre-Yves Baudin , Danny Goodman , Puneet Kumar , Noura Azzabou , Pierre G. Carlier , Nikos Paragios , M. Pawan Kumar

With the advanced imaging technology, digital pathology imaging of tumor tissue slides is becoming a routine clinical procedure for cancer diagnosis. This process produces massive imaging data that capture histological details in high…

Applications · Statistics 2020-12-10 Esteban Fernández Morales , Cong Zhang , Guanghua Xiao , Chul Moon , Qiwei Li

Radiomics is a promising technology that focuses on improvements of image analysis, using an automated high-throughput extraction of quantitative features. However, the character of lesion is affected by the surrounding tissue. A lesion on…

Quantitative Methods · Quantitative Biology 2021-11-12 Takuma Usuzaki , Kengo Takahash , Kazuma Umemiya

Breast tumor segmentation is one of the key steps that helps us characterize and localize tumor regions. However, variable tumor morphology, blurred boundary, and similar intensity distributions bring challenges for accurate segmentation of…

Image and Video Processing · Electrical Eng. & Systems 2024-01-23 Gongping Chen , Lei Li , JianXun Zhang , Yu Dai

Objectives: The role of advanced diffusion-weighted imaging (DWI) in chronic liver disease (CLD) has not been fully studied. Chronic liver disease (CLD) is a progressive deterioration of liver functions, caused by one or more etiology. This…

Tissues and Organs · Quantitative Biology 2025-09-10 Jiqing Huang , Benjamin Leporq , Valérie Hervieu , Sophie Gaillard , Jerome Dumortier , Olivier Beuf , Hélène Ratiney

The 5-year survival rate of Head and Neck Cancer (HNC) has not improved over the past decade and one common cause of treatment failure is recurrence. In this paper, we built Cox proportional hazard (CoxPH) models that predict the recurrence…

Image and Video Processing · Electrical Eng. & Systems 2024-02-29 Mona Furukawa , Daniel R. McGowan , Bartłomiej W. Papież

Prostate cancer is one of the most prevalent cancers worldwide. One of the key factors in reducing its mortality is based on early detection. The computer-aided diagnosis systems for this task are based on the glandular structural analysis…

Image and Video Processing · Electrical Eng. & Systems 2021-05-25 Julio Silva-Rodríguez , Elena Payá-Bosch , Gabriel García , Adrián Colomer , Valery Naranjo

Patients with metastatic breast cancer (mBC) undergo continuous medical imaging during treatment, making accurate lesion detection and monitoring over time critical for clinical decisions. Predicting drug response from post-treatment data…

Image and Video Processing · Electrical Eng. & Systems 2025-01-22 Subrata Mukherjee

Discovery of diagnostic and prognostic molecular markers is important and actively pursued the research field in cancer research. For complex diseases, this process is often performed using Machine Learning. The current study compares two…

Genomics · Quantitative Biology 2020-04-30 Aneta Polewko-Klim , Witold R. Rudnicki

We present a convex approach to probabilistic segmentation and modeling of time series data. Our approach builds upon recent advances in multivariate total variation regularization, and seeks to learn a separate set of parameters for the…

Machine Learning · Statistics 2015-11-17 Matt Wytock , J. Zico Kolter

Classical radiomic features have been designed to describe image appearance and intensity patterns. These features are directly interpretable and readily understood by radiologists. Compared with end-to-end deep learning (DL) models, lower…

Computer Vision and Pattern Recognition · Computer Science 2025-03-18 Yaxi Chen , Simin Ni , Aleksandra Ivanova , Shaheer U. Saeed , Rikin Hargunani , Jie Huang , Chaozong Liu , Yipeng Hu
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