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We realize a biochemical filtering process by introducing a buffer in a biocatalytic signal-transduction logic system based on the function of an enzyme, esterase. The input, ethyl butyrate, is converted into butyric acid-the output signal,…

Soft Condensed Matter · Physics 2017-09-13 Marcos Pita , Vladimir Privman , Mary A. Arugula , Dmitriy Melnikov , Vera Bocharova , Evgeny Katz

The synthesis of methanol from captured carbon dioxide and green hydrogen could be a promising replacement for the current fossil-based production. The major energy input and cost driver for such a process is the electricity for hydrogen…

Optimization and Control · Mathematics 2023-05-31 Simone Mucci , Alexander Mitsos , Dominik Bongartz

Bubble nucleation in weakly supersaturated solutions of carbon dioxide - such as champagne, sparkling wines and carbonated beers - is well understood. Bubbles grow and detach from nucleation sites: gas pockets trapped within hollow…

Statistical Mechanics · Physics 2015-05-27 W. T. Lee , J. S. McKechnie , M. G. Devereux

In this communication, we propose a model to study the non-equilibrium process by which actin stress fibers develop force in contractile cells. The emphasis here is on the non-equilibrium thermodynamics, which is necessary to address the…

Subcellular Processes · Quantitative Biology 2014-04-25 Mirko Maraldi , Krishna Garikipati

Numerical simulations of hydrated proteins show that protein hydration shells are polarized into a ferroelectric cluster with a large magnitude of its average dipole moment. The emergence of this new mesophase dramatically alters the…

Biological Physics · Physics 2010-06-02 David N. LeBard , Dmitry V. Matyushov

Influence of pulsed electric field (PEF) simultaneous to pressure treatment on moisture expression from fine-cut cellular raw material has been investigated. Dependencies of specific conductivity $\sigma$, liquid yield $Y$, instantaneous…

Biological Physics · Physics 2007-05-23 M. I. Bazhal , N. I. Lebovka , E. I. Vorobiev

Recent experiments aimed at probing the dynamics of excitons have revealed that semiconducting films composed of disordered molecular subunits, unlike expectations for their perfectly ordered counterparts, can exhibit a time-dependent…

Chemical Physics · Physics 2015-03-02 Elizabeth M. Y. Lee , William A. Tisdale , Adam P. Willard

Grain boundary embrittlement occurs when a solute enriches at a grain boundary and lowers its cohesive energy. While grain boundary enrichment is often attributed to equilibrium segregation effects, most models of embrittlement consider…

Materials Science · Physics 2015-08-18 Michael A. Gibson , Christopher A. Schuh

The formation of methanol (CH3OH) on icy grain mantles during the star formation cycle is mainly associated with the CO freeze-out stage. Yet there are reasons to believe that CH3OH also can form at an earlier period of interstellar ice…

Astrophysics of Galaxies · Physics 2018-05-02 D. Qasim , K. -J. Chuang , G. Fedoseev , S. Ioppolo , A. C. A. Boogert , H. Linnartz

The genetic code underlying protein synthesis is a canonical example of a degenerate biological system. Degeneracies in physical and biological systems can be lifted by external perturbations thus allowing degenerate systems to exhibit a…

Genomics · Quantitative Biology 2013-04-23 Arvind R. Subramaniam , Tao Pan , Philippe Cluzel

We present a study investigating the role of mitochondrial variability in generating noise in eukaryotic cells. Noise in cellular physiology plays an important role in many fundamental cellular processes, including transcription,…

Cell Behavior · Quantitative Biology 2015-05-28 Iain G. Johnston , Bernadett Gaal , Ricardo Pires das Neves , Tariq Enver , Francisco J. Iborra , Nick S. Jones

The role of post-translational modification of histones in eukaryotic gene regulation is well recognized. Epigenetic silencing of genes via heritable chromatin modifications plays a major role in cell fate specification in higher organisms.…

Molecular Networks · Quantitative Biology 2009-11-13 Mohammad Sedighi , Anirvan M. Sengupta

Stress induced yielding/fluidization in disordered solids, characterized by irreversibility and enhanced dissipation, is important for a wide range of industrial and geological processes. Although, such phenomena in thermal systems have…

Soft Condensed Matter · Physics 2022-06-28 Sebanti Chattopadhyay , Sharadhi Nagaraja , Sayantan Majumdar

Living cells exhibit a complex organization comprising numerous compartments, among which are RNA- and protein-rich membraneless, liquid-like organelles known as biomolecular condensates. Energy-consuming processes regulate their formation…

Fingering convection is a turbulent mixing process that can occur in stellar radiative regions whenever the mean molecular weight increases with radius. In some cases, it can have a significant observable impact on stellar structure and…

Solar and Stellar Astrophysics · Physics 2019-07-10 P. Garaud , A. Kumar , J. Sridhar

Protein sequence analysis underpins research in biophysics, computational biology, and bioinformatics. We introduce BEER, a crossplatform graphical interface that accepts FASTA or Protein Data Bank (PDB) files, or manual sequence entry, and…

Biomolecules · Quantitative Biology 2025-04-30 Saumyak Mukherjee

In this paper, the self-assembly of condensed droplets on smooth and constrained surfaces under saturated vapor atmosphere of ethanol and methanol binary system is reported. Hexagonally ordered array of pores are obtained on smooth surfaces…

Soft Condensed Matter · Physics 2018-07-06 K Nilavarasi , V Madhurima

We explore the dependence of a wide set of properties of monohydric alcohols on temperature by using the isobaric-isothermal molecular dynamics computer simulations. Namely, methanol (MeOH), ethanol (EtOH) and 1-propanol (PrOH) alcohols are…

Soft Condensed Matter · Physics 2026-03-31 M. Aguilar , E. Núñez-Rojas , O. Pizio

Aging in Caenorhabditis elegans is controlled, in part, by the insulin-like signaling and heat shock response pathways. Following thermal stress, expression levels of small heat shock protein 16.2 show a spatial patterning across the 20…

Molecular Networks · Quantitative Biology 2017-06-13 J. M. Wentz , A. Mendenhall , D. M. Bortz

We explored the composition dependence of a rather comprehensive set of properties of liquid water-ethanol mixtures by using the isobaric-isothermal molecular dynamics computer simulations. The united atom non-polarizable model from the…

Soft Condensed Matter · Physics 2024-07-02 D. Benavides Bautista , M. Aguilar , O. Pizio