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In this paper we study aggregation kinetics in systems of particles functionalised by complementary linkers. Most of the coarse-grained models currently employed to study large-scale self-assembly of these systems rely on effective…

Soft Condensed Matter · Physics 2018-12-24 S. J. Bachmann , M. Petitzon , B. M. Mognetti

We prove the dynamical large deviations for a particle system in which particles may have different velocities. We assume that we have two infinite reservoirs of particles at the boundary: this is the so-called boundary driven process. The…

Probability · Mathematics 2010-06-02 Jonathan Farfan , Alexandre B. Simas , Fabio J. Valentim

A system far from equilibrium is characterized by unconventional many-body dynamical effects, which can lead to anomalous density fluctuations and mass transport. Interestingly, these structural and dynamic features often emerge…

Statistical Mechanics · Physics 2010-03-09 David A. Head , Hajime Tanaka

The transport of motile entities across modulated energy landscapes plays an important role in a range of phenomena in biology, colloidal science and solid-state physics. Here, an easily implementable strategy that allows for the collective…

Soft Condensed Matter · Physics 2020-03-11 Fernando Martínez-Pedrero , Francisco Ortega , Ramón G. Rubio , Carles Calero

We study a model of interacting random walkers that proposes a simple mechanism for the emergence of cooperation in group of individuals. Each individual, represented by a Brownian particle, experiences an interaction produced by the local…

Statistical Mechanics · Physics 2007-05-23 Fabio Cecconi , Giuseppe Gonnella , Gustavo P. Saracco

We study the dynamics of a small solid particle arising from the dewetting of a thin film on a curved substrate driven by capillarity, where mass transport is controlled by surface diffusion. We consider the case when the size of the…

Materials Science · Physics 2024-09-06 Quan Zhao , Wei Jiang , Yan Wang , David J. Srolovitz , Tiezheng Qian , Weizhu Bao

We describe the random motion of a particle immersed in a thermally fluctuating medium and harmonically trapped at a certain distance from a wall. The medium, modeled by a Gaussian field with a tunable correlation length $\xi$, is linearly…

Statistical Mechanics · Physics 2025-11-27 Marcin Piotr Pruszczyk , Andrea Gambassi

Adsorption on a boundary line confining a monolayer of particles self-assembling into clusters is studied by MC simulations. We focus on a system of particles interacting via competing interaction potential in which effectively short-range…

Soft Condensed Matter · Physics 2020-01-22 E. Bildanau , J. Pȩkalski , V. Vikhrenko , A. Ciach

In this work, we focus on the behavior of a single passive Brownian particle in a suspension of passive particles with short-range repulsive interactions and a larger self-diffusion coefficient. While the forces affecting the…

Statistical Mechanics · Physics 2023-04-26 Deborah Schwarcz , Stanislav Burov

In bidisperse particle mixtures varying in size or density alone, large particles rise (driven by percolation) and heavy particles sink (driven by buoyancy). When the two particle species differ from each other in both size and density, the…

Soft Condensed Matter · Physics 2021-06-09 Yifei Duan , Paul B. Umbanhowar , Richard M. Lueptow

Controlling interactions out of thermodynamic equilibrium is crucial for designing addressable and functional self-organizing structures. These active interactions also underpin collective behavior in biological systems. Here we study a…

Soft Condensed Matter · Physics 2017-08-23 Hidenori Tanaka , Alpha A. Lee , Michael P. Brenner

Despite recent developments in management theory, maintaining a manufacturing schedule remains difficult because of production delays and fluctuations in demand and supply of materials. The response of manufacturing systems to such…

Physics and Society · Physics 2015-06-23 Takahiro Ezaki , Daichi Yanagisawa , Katsuhiro Nishinari

Aggregation of like-charged polymers is widely observed in biological and soft matter systems. In many systems, bundles are formed when a short-range attraction of diverse physical origin like charge-bridging, hydrogen-bonding or…

Soft Condensed Matter · Physics 2016-06-22 Sandipan Dutta , P. Benetatos , Y. S. Jho

We show that macro-molecular self-assembly can recognize and classify high-dimensional patterns in the concentrations of $N$ distinct molecular species. Similar to associative neural networks, the recognition here leverages dynamical…

Disordered Systems and Neural Networks · Physics 2017-04-26 Weishun Zhong , David J. Schwab , Arvind Murugan

We study an interacting particle system of a finite number of labelled particles on the integer lattice, in which particles have intrinsic masses and left/right jump rates. If a particle is the minimal-label particle at its site when it…

Probability · Mathematics 2025-09-11 Mikhail Menshikov , Serguei Popov , Andrew Wade

The self-assembly of particles into organized structures is a key feature of living organisms and a major engineering challenge. While it may proceed through the binding of perfectly matched, puzzle-pieces-like particles, many other…

Soft Condensed Matter · Physics 2024-04-08 Hugo Le Roy , M. Mert Terzi , Martin lenz

We investigate dynamics of deformable self-propelled particles with a repulsive interaction whose magnitude depends on the relative direction of elongation of a pair of particles. A collective motion of the particles appears in two…

Soft Condensed Matter · Physics 2015-05-27 Yu Itino , Takahiro Ohkuma , Takao Ohta

We discuss biologically inspired, inherently non-equilibrium self-propelled particle models, in which the particles interact with their neighbours by choosing at each time step the local average direction of motion. We summarize some of the…

Statistical Mechanics · Physics 2007-05-23 Andras Czirok , Tamas Vicsek

Proteinaceous aggregation occurs through self-assembly-- a process not entirely understood. In a recent article [1], an analytical theory for amyloid fibril growth via secondary rather than primary nucleation was presented. Remarkably, with…

Biological Physics · Physics 2010-06-16 Barry D. Ganapol

We use a combination of unsupervised clustering and sparsity-promoting inference algorithms to learn locally dominant force balances that explain macroscopic pattern formation in self-organized active particle systems. The self-organized…

Soft Condensed Matter · Physics 2023-07-28 Dominik Sturm , Suryanarayana Maddu , Ivo F. Sbalzarini