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New model equations are derived for dynamics of self-aggregation of finite-size particles. Differences from standard Debye-Huckel and Keller-Segel models are: the mobility of particles depends on the configuration of their neighbors and…

Pattern Formation and Solitons · Physics 2009-11-11 Darryl D. Holm , Vakhtang Putkaradze

The emergence of collective dynamics in neural networks is a mechanism of the animal and human brain for information processing. In this paper, we develop a computational technique using distributed processing elements in a complex network,…

Artificial Intelligence · Computer Science 2018-02-20 Filipe Alves Neto Verri , Paulo Roberto Urio , Liang Zhao

Assembly theory predicts that a distinguishing signature of life is its ability to produce complex molecules in abundance, opening new possibilities for life detection. Experimental validation of this approach has so far relied on abiotic…

Biological Physics · Physics 2025-09-08 Alexandre Champagne-Ruel , Christopher P. Kempes , Cole Mathis

We present a simple solution to enhance the separation ability of deterministic lateral displacement (DLD) systems by expanding the two-dimensional nature of these devices and driving the particles into size-dependent, fully…

Soft Condensed Matter · Physics 2016-04-27 Siqi Du , German Drazer

While evaporating solvent is a widely used technique to assemble nano-sized objects into desired superstructures, there has been limited work on how the assembled structures are affected by the physical aspects of the process. We present…

Soft Condensed Matter · Physics 2013-11-20 Shengfeng Cheng , Gary S. Grest

We study two mechanisms for the formation of protein patterns near membranes of living cells by mathematical modelling. Self-assembly of protein domains by electrostatic lipid-protein interactions is contrasted with self-organization due to…

Cell Behavior · Quantitative Biology 2007-05-23 Karin John , Markus Baer

The spontaneous organization of particles at the boundary between two fluids is a common occurrence. Scientists have extensively investigated various internal and external factors to manipulate and guide these self-assembly processes. This…

Soft Condensed Matter · Physics 2025-02-11 Priyanka Biswas , Gaurav Pransu

Dynamical heterogeneities in a colloidal fluid close to gelation are studied by means of computer simulations. A clear distinction between some fast particles and the rest, slow ones, is observed, yielding a picture of the gel composed by…

Soft Condensed Matter · Physics 2009-11-10 Antonio M. Puertas , Matthias Fuchs , Michael E. Cates

A one-dimensional rule-based model for flocking, that combines velocity alignment and long-range centering interactions, is presented and studied. The induced cohesion in the collective motion of the self-propelled agents leads to a unique…

Statistical Mechanics · Physics 2015-01-19 V. Dossetti

We study a class of dynamically constructed point processes in which at every step a new point (particle) is added to the current configuration with a distribution depending on the local structure around a uniformly chosen particle. This…

Probability · Mathematics 2012-03-22 Anton Muratov , Sergei Zuyev

Understanding the organization of collective motion in biological systems is an ongoing challenge. In this Paper we consider a minimal model of self-propelled particles with variable speed. Inspired by experimental data from schooling fish,…

Biological Physics · Physics 2015-06-04 Shradha Mishra , Kolbjørn Tunstrøm , Iain D. Couzin , Cristián Huepe

An optimal control strategy is developed to construct nanostructures of desired geometry along line segments by means of directed self-assembly of charged particles. Such a control strategy determines the electric potentials of a set of…

Dynamical Systems · Mathematics 2016-03-02 Arash Komaee , Paul I. Barton

We consider a stochastic aggregation model on Z^d. Start with particles located at the vertices of the lattice, initially distributed according to the product Bernoulli measure with parameter \mu. In addition, there is an aggregate, which…

Probability · Mathematics 2019-04-22 Vladas Sidoravicius , Alexandre Stauffer

We investigate a system of co-oriented active particles interacting only via hydrodynamic and steric interactions. We offer a new method of calculating the flow created by any active particle in a 2D fluid, focusing on the dynamics of flow…

Soft Condensed Matter · Physics 2023-11-27 Roee Bashan , Naomi Oppenheimer

Aggregation phenomena are ubiquitous in nature, encompassing out-of-equilibrium processes of fractal pattern formation, important in many areas of science and technology. Despite their simplicity, foundational models such as…

Statistical Mechanics · Physics 2016-05-31 J. R. Nicolás-Carlock , J. L. Carrillo-Estrada , V. Dossetti

A collection of thin structures buckle, bend, and bump into each-other when confined. This contact can lead to the formation of patterns: hair will self-organize in curls; DNA strands will layer into cell nuclei; paper, when crumpled, will…

Soft Condensed Matter · Physics 2023-04-19 Arman Guerra , Anja Slim , Douglas P. Holmes , Ousmane Kodio

We investigate a one-dimensional system of $N$ particles, initially distributed with random positions and velocities, interacting through binary collisions. The collision rule is such that there is a time after which the $N$ particles do…

Mathematical Physics · Physics 2018-03-14 Joceline Lega , Sunder Sethuraman , Alexander L Young

Assembly planning is the core of automating product assembly, maintenance, and recycling for modern industrial manufacturing. Despite its importance and long history of research, planning for mechanical assemblies when given the final…

Robotics · Computer Science 2022-11-09 Yunsheng Tian , Jie Xu , Yichen Li , Jieliang Luo , Shinjiro Sueda , Hui Li , Karl D. D. Willis , Wojciech Matusik

We give a quantitative analysis of clustering in a stochastic model of one-dimensional gas. At time zero, the gas consists of $n$ identical particles that are randomly distributed on the real line and have zero initial speeds. Particles…

Probability · Mathematics 2008-06-17 Vladislav V. Vysotsky

We study the spatial patterns formed by a system of interacting particles where the mobility of any individual is determined by the population crowding at two different spatial scales. In this way we model the behavior of some biological…

Statistical Mechanics · Physics 2015-07-08 Ricardo Martínez-García , Clara Murgui , Emilio Hernández-García , Cristóbal López
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