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In the mammalian hippocampus, the dentate gyrus (DG) is characterized by sparse and powerful unidirectional projections to CA3 pyramidal cells, the so-called mossy fibers. Mossy fiber synapses appear to duplicate, in terms of the…

Neurons and Cognition · Quantitative Biology 2015-05-13 Erika Cerasti , Alessandro Treves

Purpose: MRI cell tracking can be used to monitor immune cells involved in the immunotherapy response, providing insight into the mechanism of action, temporal progression of tumour growth and individual potency of therapies. To evaluate…

We discuss memory models which are based on tensor decompositions using latent representations of entities and events. We show how episodic memory and semantic memory can be realized and discuss how new memory traces can be generated from…

Artificial Intelligence · Computer Science 2017-08-29 Volker Tresp , Yunpu Ma

COVID-19 vaccines have proven to be effective against SARS-CoV-2 infection. However, the dynamics of vaccine-induced immunological memory development and neutralizing antibodies generation are not fully understood, limiting vaccine…

Quantitative Methods · Quantitative Biology 2022-04-06 Xin Gao , Jianwei Li , Dianjie Li

Associative network models featuring multi-tasking properties have been introduced recently and studied in the low load regime, where the number $P$ of simultaneously retrievable patterns scales with the number $N$ of nodes as $P\sim \log…

Disordered Systems and Neural Networks · Physics 2013-03-01 Elena Agliari , Alessia Annibale , Adriano Barra , A. C. C. Coolen , Daniele Tantari

The most important challenge in the scaling down of flash memory is its increased inter-cell interference (ICI). If side information about ICI is known to the encoder, the flash memory channel can be viewed as similar to Costa's "writing on…

Information Theory · Computer Science 2015-02-11 Yongjune Kim , B. V. K. Vijaya Kumar

According to Jerne's idiotypic network hypothesis, the adaptive immune system is regulated by interactions between the variable regions of antibodies, B cells, and T cells.1 The symmetrical immune network theory2,3 is based on Jerne's…

Cell Behavior · Quantitative Biology 2014-03-07 Earnest Leung , Geoffrey W. Hoffmann

Migrating cells exhibit various motility patterns, resulting from different migration mechanisms, cell properties, or cell-environment interactions. The complexity of cell dynamics is reflected, e.g., in the diversity of the observed forms…

Biological Physics · Physics 2023-07-07 M. Reza Shaebani , Matthieu Piel , Franziska Lautenschläger

This contribution is devoted to a new model of HIV multiplication motivated by the patent of one of the authors. We take into account the antigenic diversity through what we define "antigenicity", whether of the virus or of the adapted…

Numerical Analysis · Mathematics 2011-02-02 François Dubois , Hervé Le Meur , Claude Reiss

A stochastic model for the activation of T-cells is analysed. T-cells are part of the immune system and recognize foreign antigens against a background of the body's own molecules. The model under consideration is a slight generalization of…

Subcellular Processes · Quantitative Biology 2009-02-19 Natali Zint , Ellen Baake , Frank den Hollander

Multiple Sclerosis (MS) is a chronic autoimmune disease of the central nervous system whose molecular mechanisms remain incompletely understood. In this study, we developed an end-to-end machine learning pipeline to analyze transcriptomic…

I study the physical nature of traces (or memories). Surprisingly, (i) systems separation with (ii) temperature differences and (iii) long thermalization times, are sufficient conditions to produce macroscopic traces. Traces of the past are…

History and Philosophy of Physics · Physics 2020-03-17 Carlo Rovelli

One strategy for winning a coevolutionary struggle is to evolve rapidly. Most of the literature on host-pathogen coevolution focuses on this phenomenon, and looks for consequent evidence of coevolutionary arms races. An alternative…

Populations and Evolution · Quantitative Biology 2012-11-14 Erick Chastain , Rustom Antia , Carl T. Bergstrom

In this work, the capability of primary, monocyte-derived dendritic cells (DCs) to uptake iron oxide magnetic nanoparticles (MNPs) is assessed and a strategy to induce selective cell death in these MNP-loaded DCs using external alternating…

Biological Physics · Physics 2011-04-01 I. Marcos-Campos , L. Asín , T. E. Torres , C. Marquina , A. Tres , M. R. Ibarra , G. F. Goya

Effective recognition of foreign antigens by the adaptive immune system relies on T cells being activated by antigen-presenting cells (APCs) in lymph nodes. Here, diffusing T cells may encounter cognate APCs that present matching antigen…

Quantitative Methods · Quantitative Biology 2025-10-03 Tony Wong , Ikchang Cho , Maria R. D'Orsogna , Tom Chou

The immune system is a highly parallel and distributed intelligent system which has learning, memory, and associative capabilities. Artificial Immune System is an evolutionary paradigm inspired by the biological aspects of the immune system…

Cryptography and Security · Computer Science 2011-02-22 Tejbanta Singh Chingtham , G. Sahoo , M. K. Ghose

We consider mathematical models of infection diseases built by G.I. Marchuk in his well known book on immunology. These models are in the form of systems of ordinary delay differential equations. We add a distributed control in one of the…

Cell Behavior · Quantitative Biology 2020-08-28 Irina Volinsky , Alexander Domoshnitsky , Marina Bershadsky , Roman Shklyar

Memories are stored, at least partly, as patterns of strong synapses. Given molecular turnover, how can synapses maintain strong for the years that memories can persist? Some models postulate that biochemical bistability maintains strong…

Neurons and Cognition · Quantitative Biology 2015-04-09 Paul Smolen

The adaptive and innate branches of the vertebrate immune system work in close collaboration to protect organisms from harmful pathogens. As an organism ages its immune system undergoes immunosenescence, characterized by declined…

Tissues and Organs · Quantitative Biology 2020-08-28 Eric W. Jones , Jiming Sheng , Jean M. Carlson , Shenshen Wang

The search to understand how the HIV virus spreads inside the human body and how the immune response works to control it has motivated studies related to Mathematical Immunology. Actually, researches include the idea of mathematical models…

Populations and Evolution · Quantitative Biology 2016-01-19 Marcelo Margon Rossi , Luis Fernandez Lopez
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