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A key ingredient of current models proposed to capture the topological evolution of complex networks is the hypothesis that highly connected nodes increase their connectivity faster than their less connected peers, a phenomenon called…

Statistical Mechanics · Physics 2009-11-07 H. Jeong , Z. Neda , A. -L. Barabasi

Many social, technological, biological, and economical systems are best described by weighted networks, whose properties and dynamics depend not only on their structures but also on the connection weights among their nodes. However, most…

Disordered Systems and Neural Networks · Physics 2015-06-24 Chunguang Li , Guanrong Chen

Understanding the mutual interdependence between the behavior of dynamical processes on networks and the underlying topologies promises new insight for a large class of empirical networks. We present a generic approach to investigate this…

Disordered Systems and Neural Networks · Physics 2012-08-08 Steffen Karalus , Markus Porto

Preferential attachment is often suggested to be the underlying mechanism of the growth of a network, largely due to that many real networks are, to a certain extent, scale-free. However, such attribution is usually made under debatable…

Applications · Statistics 2025-09-16 Clement Lee

The seceder model illustrates how the desire to be different than the average can lead to formation of groups in a population. We turn the original, agent based, seceder model into a model of network evolution. We find that the structural…

Disordered Systems and Neural Networks · Physics 2007-05-23 Andreas Gronlund , Petter Holme

We consider networks of dynamical units that evolve in time according to different laws, and are coupled to each other in highly irregular ways. Studying how to steer the dynamics of such systems towards a desired evolution is of great…

Physics and Society · Physics 2020-12-01 Ricardo Gutiérrez , Massimo Materassi , Stefano Focardi , Stefano Boccaletti

We model a social-encounter network where linked nodes match for reproduction in a manner depending probabilistically on each node`s attractiveness. The developed model reveals that increasing either the network`s mean degree or the…

Physics and Society · Physics 2017-06-22 S. Dipple , T. Jia , T. Caraco , G. Korniss , B. K. Szymanski

We develop a new framework for modeling innovation networks which evolve over time. The nodes in the network represent firms, whereas the directed links represent unilateral interactions between the firms. Both nodes and links evolve…

Physics and Society · Physics 2007-12-18 Michael D. Koenig , Stefano Battiston , Frank Schweitzer

Phylogenetic networks are a type of directed acyclic graph that represent how a set $X$ of present-day species are descended from a common ancestor by processes of speciation and reticulate evolution. In the absence of reticulate evolution,…

Combinatorics · Mathematics 2017-08-11 Andrew Francis , Charles Semple , Mike Steel

We consider models for growing networks incorporating two effects not previously considered: (i) different species of nodes, with each species having different properties (such as different attachment probabilities to other node species);…

Data Analysis, Statistics and Probability · Physics 2009-11-07 Jong-Won Kim , Brian Hunt , Edward Ott

Modularity structures are common in various social and biological networks. However, its dynamical origin remains an open question. In this work, we set up a dynamical model describing the evolution of a social network. Based on the…

Physics and Society · Physics 2011-08-19 Menghui Li , Shuguang Guan , Choy-Heng Lai

A growing body of empirical evidence indicates that social and cooperative behavior can be affected by cognitive and neurological factors, suggesting the existence of state-based decision-making mechanisms that may have emerged by…

Populations and Evolution · Quantitative Biology 2017-08-23 Zoran Utkovski , Viktor Stojkoski , Lasko Basnarkov , Ljupco Kocarev

The propagations of diseases, behaviors and information in real systems are rarely independent of each other, but they are coevolving with strong interactions. To uncover the dynamical mechanisms, the evolving spatiotemporal patterns and…

Physics and Society · Physics 2019-10-02 Wei Wang , Quan-Hui Liu , Junhao Liang , Yanqing Hu , Tao Zhou

In spite of its relevance to the origin of complex networks, the interplay between form and function and its role during network formation remains largely unexplored. While recent studies introduce dynamics by considering rewiring processes…

Physics and Society · Physics 2008-07-18 J. Poncela , J. Gomez-Gardenes , L. M. Floria , A. Sanchez , Y. Moreno

We introduce a minimalistic model based on dynamic node deletion and node duplication with heterodimerisation. The model is intended to capture the essential features of the evolution of protein interaction networks. We derive an exact…

Biological Physics · Physics 2009-11-13 Nadia Farid , Kim Christensen

This paper reviews, classifies and compares recent models for social networks that have mainly been published within the physics-oriented complex networks literature. The models fall into two categories: those in which the addition of new…

Physics and Society · Physics 2008-12-24 Riitta Toivonen , Lauri Kovanen , Mikko Kivelä , Jukka-Pekka Onnela , Jari Saramäki , Kimmo Kaski

Search for possible relationships between phylogeny and ontogeny is one of the most important issues in the field of evolutionary developmental biology. By representing developmental dynamics of spatially located cells with gene expression…

Populations and Evolution · Quantitative Biology 2015-04-01 Takahiro Kohsokabe , Kunihiko Kaneko

In this work, we present graph star net (GraphStar), a novel and unified graph neural net architecture which utilizes message-passing relay and attention mechanism for multiple prediction tasks - node classification, graph classification…

Social and Information Networks · Computer Science 2019-07-01 Lu Haonan , Seth H. Huang , Tian Ye , Guo Xiuyan

A biologically motivated individual-based framework for evolution in network-structured populations is developed that can accommodate eco-evolutionary dynamics. This framework is used to construct a network birth and death model. The…

Populations and Evolution · Quantitative Biology 2021-03-19 Karan Pattni , Christopher E. Overton , Kieran J. Sharkey

Regulatory networks consist of interacting molecules with a high degree of mutual chemical specificity. How can these molecules evolve when their function depends on maintenance of interactions with cognate partners and simultaneous…

Populations and Evolution · Quantitative Biology 2017-11-01 Tamar Friedlander , Roshan Prizak , Nicholas H. Barton , Gašper Tkačik
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