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Non-genetic heterogeneity is key to cellular decisions, as even genetically identical cells respond in very different ways to the same external stimulus, e.g., during cell differentiation or therapeutic treatment of disease. Strong…

Molecular Networks · Quantitative Biology 2020-07-20 Uddipan Sarma , Lorenz Hexemer , Uchenna Alex Anyaegbunam , Stefan Legewie

Developing deep networks that analyze fashion garments has many real-world applications. Among all fashion attributes, color is one of the most important yet challenging to detect. Existing approaches are classification-based and thus…

Computer Vision and Pattern Recognition · Computer Science 2022-06-01 Alexandre Rame , Arthur Douillard , Charles Ollion

The rings, spots and stripes found on some butterflies, Pachyrhynchus weevils, and many chameleons are notable examples of natural organisms employing photonic crystals to produce colorful patterns. Despite advances in nanotechnology, we…

Coloring is used in wireless networks to improve communication efficiency, mainly in terms of bandwidth, energy and possibly end-to-end delays. In this paper, we define the h-hop node coloring problem, with h any positive integer, adapted…

Networking and Internet Architecture · Computer Science 2012-09-14 Ichrak Amdouni , Pascale Minet , Cédric Adjih

One of the major challenges in biology concerns the integration of data across length and time scales into a consistent framework: how do macroscopic properties and functionalities arise from the molecular regulatory networks - and how can…

Computational Engineering, Finance, and Science · Computer Science 2015-10-20 Dagmar Iber , Zahra Karimaddini , Erkan Ünal

Neurons in the brain are often finely tuned for specific task variables. Moreover, such disentangled representations are highly sought after in machine learning. Here we mathematically prove that simple biological constraints on neurons,…

Neurons and Cognition · Quantitative Biology 2023-04-04 James C. R. Whittington , Will Dorrell , Surya Ganguli , Timothy E. J. Behrens

Neural Cellular Automata (NCAs) are a model of morphogenesis, capable of growing two-dimensional artificial organisms from a single seed cell. In this paper, we show that NCAs can be trained to respond to signals. Two types of signal are…

Neural and Evolutionary Computing · Computer Science 2024-01-30 James Stovold

The skin of a cephalopod forms a dazzling array of patterns made by chromatophores, elastic sacs of pigment that can be expanded by muscles to reveal their color. Tens of thousands of these chromatophores can work together to generate a…

Pattern Formation and Solitons · Physics 2024-06-11 Khalil Iskarous , Jennifer Mather , Jean Alupay

The problem of cell association is considered for cellular users present in the field. This has become a challenging problem with the deployment of 5G networks which will share the sub-6 GHz bands with the legacy 4G networks. Instead of…

Signal Processing · Electrical Eng. & Systems 2019-10-31 Yinsong Wang , Hessam Mahdavifar , Kamran Entesari , Shahin Shahrampour

This paper presents a method for time-lapse 3D cell analysis. Specifically, we consider the problem of accurately localizing and quantitatively analyzing sub-cellular features, and for tracking individual cells from time-lapse 3D confocal…

Computer Vision and Pattern Recognition · Computer Science 2022-08-18 Jiaxiang Jiang , Amil Khan , S. Shailja , Samuel A. Belteton , Michael Goebel , Daniel B. Szymanski , B. S. Manjunath

Fungal simulation and control are considered crucial techniques in Bio-Art creation. However, coding algorithms for reliable fungal simulations have posed significant challenges for artists. This study equates fungal morphology simulation…

Graphics · Computer Science 2024-09-10 Kexin Wang , Ivy He , Jinke Li , Ali Asadipour , Yitong Sun

This paper describes an Artificial Embryology method (called ``Epigenetic Tracking'') to generate predefined arbitrarily shaped 2-dimensional arrays of cells by means of evolutionary techniques. It is based on a model of development, whose…

Adaptation and Self-Organizing Systems · Physics 2008-05-19 Alessandro Fontana

Cell imaging and analysis are fundamental to biomedical research because cells are the basic functional units of life. Among different cell-related analysis, cell counting and detection are widely used. In this paper, we focus on one common…

Computer Vision and Pattern Recognition · Computer Science 2019-04-19 Haoyi Liang , Aijaz Naik , Cedric L. Williams , Jaideep Kapur , Daniel S. Weller

We consider the problem of online graph multi-coloring with advice. Multi-coloring is often used to model frequency allocation in cellular networks. We give several nearly tight upper and lower bounds for the most standard topologies of…

Data Structures and Algorithms · Computer Science 2014-09-08 Marie G. Christ , Lene M. Favrholdt , Kim S. Larsen

While human technology is ruled by determinism, biological systems exploit a subtle balance of control and stochasticity. This balance, evident in the morphogenesis of textural patterns imprinted on leaves, fur or skin can help hierarchize…

We propose distributed algorithms for two well-established problems that operate efficiently under extremely harsh conditions. Our algorithms achieve state-of-the-art performance in a simple and novel way. Our algorithm for maximal…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-01-19 Peter Jeavons , Alex Scott , Lei Xu

During developmental processes such as embryogenesis, how a group of cells fold into specific structures, is a central question in biology that defines how living organisms form. Establishing tissue-level morphology critically relies on how…

Soft Condensed Matter · Physics 2024-07-23 Haiqian Yang , Anh Q. Nguyen , Dapeng Bi , Markus J. Buehler , Ming Guo

Diffusion models have shown great promise in synthesizing visually appealing images. However, it remains challenging to condition the synthesis at a fine-grained level, for instance, synthesizing image pixels following some generic color…

Computer Vision and Pattern Recognition · Computer Science 2025-03-11 Ka Chun Shum , Binh-Son Hua , Duc Thanh Nguyen , Sai-Kit Yeung

The concentration gradient of the Bicoid morphogen, which is established during the early stages of a Drosophila melanogaster embryonic development, determines the differential spatial patterns of gene expression and subsequent cell fate…

Multiagent Systems · Computer Science 2014-12-18 Mariam Kiran , Wei Liu

Diffusion models are a special type of generative model, capable of synthesising new data from a learnt distribution. We introduce DISPR, a diffusion-based model for solving the inverse problem of three-dimensional (3D) cell shape…

Computer Vision and Pattern Recognition · Computer Science 2023-03-15 Dominik J. E. Waibel , Ernst Röell , Bastian Rieck , Raja Giryes , Carsten Marr