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Clustering data objects into homogeneous groups is one of the most important tasks in data mining. Spectral clustering is arguably one of the most important algorithms for clustering, as it is appealing for its theoretical soundness and is…

Machine Learning · Statistics 2024-03-12 Dylan Soemitro , Jeova Farias Sales Rocha Neto

DNA storage technology offers new possibilities for addressing massive data storage due to its high storage density, long-term preservation, low maintenance cost, and compact size. To improve the reliability of stored information, base…

Machine Learning · Computer Science 2024-09-24 Bowen Liu , Jiankun Li

Text Clustering is a text mining technique which divides the given set of text documents into significant clusters. It is used for organizing a huge number of text documents into a well-organized form. In the majority of the clustering…

Information Retrieval · Computer Science 2015-03-12 G. Hannah Grace , Kalyani Desikan

Subspace clustering aims to find groups of similar objects (clusters) that exist in lower dimensional subspaces from a high dimensional dataset. It has a wide range of applications, such as analysing high dimensional sensor data or DNA…

Machine Learning · Computer Science 2018-11-08 Minh Tuan Doan , Jianzhong Qi , Sutharshan Rajasegarar , Christopher Leckie

We propose a novel coding scheme for DNA-based storage systems, called the shift-interleave (SI) coding, designed to correct insertion, deletion, and substitution (IDS) errors, as well as sequence losses. The SI coding scheme employs…

Information Theory · Computer Science 2024-01-29 Ryo Shibata , Haruhiko Kaneko

There is a growing interest in characterizing circular data found in biological systems. Such data are wide ranging and varied, from signal phase in neural recordings to nucleotide sequences in round genomes. Traditional clustering…

Machine Learning · Computer Science 2023-09-19 Xiaoxiao Sun , Paul Sajda

This paper presents and analyzes a novel concatenated coding scheme for enabling error resilience in two distributed storage settings: one being storage using existing regenerating codes and the second being storage using locally repairable…

Information Theory · Computer Science 2013-12-12 Natalia Silberstein , Ankit Singh Rawat , Sriram Vishwanath

This paper considers metric spaces where distances between a pair of nodes are represented by distance intervals. The goal is to study methods for the determination of hierarchical clusters, i.e., a family of nested partitions indexed by a…

Social and Information Networks · Computer Science 2016-10-17 Weiyu Huang , Alejandro Ribeiro

Malwares are the key means leveraged by threat actors in the cyber space for their attacks. There is a large array of commercial solutions in the market and significant scientific research to tackle the challenge of the detection and…

Cryptography and Security · Computer Science 2022-11-21 Kar Wai Fok , Vrizlynn L. L. Thing

Clustering has been a major research topic in the field of machine learning, one to which Deep Learning has recently been applied with significant success. However, an aspect of clustering that is not addressed by existing deep clustering…

Computer Vision and Pattern Recognition · Computer Science 2023-04-04 Ioannis Maniadis Metaxas , Georgios Tzimiropoulos , Ioannis Patras

Due to its high data density and longevity, DNA is considered a promising medium for satisfying ever-increasing data storage needs. However, the diversity of errors that occur in DNA sequences makes efficient error-correction a challenging…

Information Theory · Computer Science 2020-11-12 Yuanyuan Tang , Farzad Farnoud

In this paper we construct multidimensional codes with high dimension. The codes can correct high dimensional errors which have the form of either small clusters, or confined to an area with a small radius. We also consider small number of…

Information Theory · Computer Science 2010-04-27 Eitan Yaakobi , Tuvi Etzion

Motivated by polymer-based data-storage platforms that use chains of binary synthetic polymers as the recording media and read the content via tandem mass spectrometers, we propose a new family of codes that allows for both unique string…

Information Theory · Computer Science 2021-06-29 Srilakshmi Pattabiraman , Ryan Gabrys , Olgica Milenkovic

DNA codes have many applications, such as in data storage, DNA computing, etc. Good DNA codes have large sizes and satisfy some certain constraints. In this paper, we present a new construction method for reversible DNA codes. We show that…

Information Theory · Computer Science 2024-03-19 Xueyan Chen , Whan-Hyuk Choi , Hongwei Liu

We describe a strategy for constructing codes for DNA-based information storage by serial composition of weighted finite-state transducers. The resulting state machines can integrate correction of substitution errors; synchronization by…

Information Theory · Computer Science 2016-11-18 Ian Holmes

In today's data-driven digital era, the amount as well as complexity, such as multi-view, non-Euclidean, and multi-relational, of the collected data are growing exponentially or even faster. Clustering, which unsupervisely extracts valid…

Machine Learning · Computer Science 2025-01-10 Zhao Kang , Xuanting Xie , Bingheng Li , Erlin Pan

With the booming development of data science, many clustering methods have been proposed. All clustering methods have inherent merits and deficiencies. Therefore, they are only capable of clustering some specific types of data robustly. In…

Computer Vision and Pattern Recognition · Computer Science 2019-05-28 Zhenzhou Wang

We consider the problem of assembling a sequence based on a collection of its substrings observed through a noisy channel. The mathematical basis of the problem is the construction and design of sequences that may be discriminated based on…

Information Theory · Computer Science 2015-11-04 Han Mao Kiah , Gregory J. Puleo , Olgica Milenkovic

Text clustering holds significant value across various domains due to its ability to identify patterns and group related information. Current approaches which rely heavily on a computed similarity measure between documents are often limited…

Information Retrieval · Computer Science 2025-04-09 Laurence Hirsch , Robin Hirsch , Bayode Ogunleye

We consider the distributed source coding problem in which correlated data picked up by scattered sensors has to be encoded separately and transmitted to a common receiver, subject to a rate-distortion constraint. Although near-tooptimal…

Information Theory · Computer Science 2008-09-09 G. Maierbacher , J. Barros