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Contraction Clustering (RASTER) is a single-pass algorithm for density-based clustering of 2D data. It can process arbitrary amounts of data in linear time and in constant memory, quickly identifying approximate clusters. It also exhibits…

Data Structures and Algorithms · Computer Science 2020-09-17 Gregor Ulm , Simon Smith , Adrian Nilsson , Emil Gustavsson , Mats Jirstrand

In this paper, we consider the outer channel for DNA-based data storage. When transmitting over the outer channel, each DNA string is treated as a unit/symbol that would be either correctly received, or erased, or corrupted by uniformly…

Information Theory · Computer Science 2025-09-23 Xuan He , Yi Ding , Kui Cai , Guanghui Song , Bin Dai , Xiaohu Tang

We study segmented burst-deletion channels motivated by the observation that synchronization errors commonly occur in a bursty manner in real-world settings. In this channel model, transmitted sequences are implicitly divided into…

Information Theory · Computer Science 2025-07-21 Yajuan Liu , Tolga M. Duman

The filtering-clustering models, including trend filtering and convex clustering, have become an important source of ideas and modeling tools in machine learning and related fields. The statistical guarantee of optimal solutions in these…

Machine Learning · Statistics 2022-01-26 Nhat Ho , Tianyi Lin , Michael I. Jordan

Distributed storage systems provide reliable access to data through redundancy spread over individually unreliable nodes. Application scenarios include data centers, peer-to-peer storage systems, and storage in wireless networks. Storing…

Networking and Internet Architecture · Computer Science 2008-03-06 Alexandros G. Dimakis , P. Brighten Godfrey , Yunnan Wu , Martin J. Wainwright , Kannan Ramchandran

One basic requirement of many studies is the necessity of classifying data. Clustering is a proposed method for summarizing networks. Clustering methods can be divided into two categories named model-based approaches and algorithmic…

Machine Learning · Computer Science 2013-02-19 Raheleh Namayandeh , Farzad Didehvar , Zahra Shojaei

The increasing demand for data storage has prompted the exploration of new techniques, with molecular data storage being a promising alternative. In this work, we develop coding schemes for a new storage paradigm that can be represented as…

Information Theory · Computer Science 2025-10-30 Boaz Moav , Ryan Gabrys , Eitan Yaakobi

Deep learning will play a crucial role in enabling cognitive automation for the mobile networks of the future. Deep clustering, a subset of deep learning, could be a valuable tool for many network automation use-cases. Unfortunately, most…

Machine Learning · Computer Science 2021-03-16 Marton Kajo , Janik Schnellbach , Stephen S. Mwanje , Georg Carle

As a possible implementation of data storage using DNA, multiple strands of DNA are stored in a liquid container so that, in the future, they can be read by an array of DNA readers in parallel. These readers will sample the strands with…

Information Theory · Computer Science 2024-09-04 Hsin-Po Wang , Venkatesan Guruswami

Batch codes are a family of codes that represent a distributed storage system (DSS) of $n$ nodes so that any batch of $t$ data symbols can be retrieved by reading at most one symbol from each node. Fractional repetition codes are a family…

Information Theory · Computer Science 2014-10-21 Natalia Silberstein

The problem of hierarchical clustering items from pairwise similarities is found across various scientific disciplines, from biology to networking. Often, applications of clustering techniques are limited by the cost of obtaining…

Machine Learning · Statistics 2012-07-20 Brian Eriksson

The paper is devoted to the problem of erasure coding in distributed storage. We consider a model of storage that assumes that nodes are organized into equally sized groups, called racks, that within each group the nodes can communicate…

Information Theory · Computer Science 2019-01-15 Zitan Chen , Alexander Barg

DNA-based data storage systems face practical challenges due to the high cost of DNA synthesis. A strategy to address the problem entails encoding data via topological modifications of the DNA sugar-phosphate backbone. The DNA Punchcards…

Emerging Technologies · Computer Science 2025-05-07 Jin Sima , Chao Pan , S. Kasra Tabatabaei , Alvaro G. Hernandez , Charles M. Schroeder , Olgica Milenkovic

Spectral clustering refers to a family of unsupervised learning algorithms that compute a spectral embedding of the original data based on the eigenvectors of a similarity graph. This non-linear transformation of the data is both the key of…

Machine Learning · Computer Science 2019-01-30 Nicolas Tremblay , Andreas Loukas

We examine an error-correcting coding framework in which each coded symbol is constrained to be a function of a fixed subset of the message symbols. With an eye toward distributed storage applications, we seek to design systematic codes…

Information Theory · Computer Science 2015-02-23 Wael Halbawi , Matthew Thill , Babak Hassibi

We propose a new approach for clustering DNA features using array CGH data from multiple tumor samples. We distinguish data-collapsing: joining contiguous DNA clones or probes with extremely similar data into regions, from clustering:…

Applications · Statistics 2010-12-21 Kyung In Kim , Etienne Roquain , Mark Van De Wiel

As a kind of basic machine learning method, clustering algorithms group data points into different categories based on their similarity or distribution. We present a clustering algorithm by finding hyper-planes to distinguish the data…

Computer Vision and Pattern Recognition · Computer Science 2020-04-28 Luhong Diao , Jinying Gao1 , Manman Deng

Spectral clustering is one of the most prominent clustering approaches. The distance-based similarity is the most widely used method for spectral clustering. However, people have already noticed that this is not suitable for multi-scale…

Machine Learning · Computer Science 2020-09-11 Hengrui Wang , Yubo Zhang , Mingzhi Chen , Tong Yang

We study the problem of applying spectral clustering to cluster multi-scale data, which is data whose clusters are of various sizes and densities. Traditional spectral clustering techniques discover clusters by processing a similarity…

Machine Learning · Computer Science 2020-06-09 Xiang Li , Ben Kao , Caihua Shan , Dawei Yin , Martin Ester

Subspace clustering refers to the problem of clustering high-dimensional data points into a union of low-dimensional linear subspaces, where the number of subspaces, their dimensions and orientations are all unknown. In this paper, we…

Machine Learning · Statistics 2014-03-17 Reinhard Heckel , Eirikur Agustsson , Helmut Bölcskei