Related papers: Tree decomposition of Reeb graphs, parametrized co…
We study connectivity problems from a fine-grained parameterized perspective. Cygan et al. (TALG 2022) obtained algorithms with single-exponential running time $\alpha^{tw} n^{O(1)}$ for connectivity problems parameterized by treewidth…
Loebl, Koml\'os and S\'os conjectured that every $n$-vertex graph $G$ with at least $n/2$ vertices of degree at least $k$ contains each tree $T$ of order $k+1$ as a subgraph. We give a sketch of a proof of the approximate version of this…
Phylogenetic networks generalise phylogenetic trees and allow for the accurate representation of the evolutionary history of a set of present-day species whose past includes reticulate events such as hybridisation and lateral gene transfer.…
Graphs are interesting structures: extremely useful to depict real-life problems, extremely easy to understand given a sketch, extremely complicated to represent formally, extremely complicated to compare. Phylogeny is the study of the…
Linear rank-width is a linearized variation of rank-width, and it is deeply related to matroid path-width. In this paper, we show that the linear rank-width of every $n$-vertex distance-hereditary graph, equivalently a graph of rank-width…
This manuscript presents a general recursive formula to estimate the size of fibers associated with algebraic maps from graphs to summary statistics of importance for social network analysis, such as number of edges (graph density), degree…
In phylogenetics, evolution is traditionally represented in a tree-like manner. However, phylogenetic networks can be more appropriate for representing evolutionary events such as hybridization, horizontal gene transfer, and others. In…
It was recently shown that the renormalization of quantum field theory is organized by the Hopf algebra of decorated rooted trees, whose coproduct identifies the divergences requiring subtraction and whose antipode achieves this. We…
We study edge-decompositions of highly connected graphs into copies of a given tree. In particular we attack the following conjecture by Bar\'at and Thomassen: for each tree $T$, there exists a natural number $k_T$ such that if $G$ is a…
We prove that if a graph has a tree-decomposition of width at most w, then it has a tree-decomposition of width at most w with certain desirable properties. We will use this result in a subsequent paper to show that every 2-connected graph…
Recently, so-called treebased phylogenetic networks have gained considerable interest in the literature, where a treebased network is a network that can be constructed from a phylogenetic tree, called the base tree, by adding additional…
In this work, we answer an open problem in the study of phylogenetic networks. Phylogenetic trees are rooted binary trees in which all edges are directed away from the root, whereas phylogenetic networks are rooted acyclic digraphs. For the…
One perspective on tree decompositions is that they display (low-order) separations of the underlying graph or matroid. The separations displayed by a tree decomposition are necessarily nested. In 2013, Clark and Whittle proved the…
The notion of bounded expansion captures uniform sparsity of graph classes and renders various algorithmic problems that are hard in general tractable. In particular, the model-checking problem for first-order logic is fixed-parameter…
This paper proves that two differently defined rooted binary trees are isomorphic. The first tree is one associated to a version of Farey sequences where the vertices correspond to the open intervals formed by two successive terms in the…
The modular decomposition of a graph $G$ is a natural construction to capture key features of $G$ in terms of a labeled tree $(T,t)$ whose vertices are labeled as "series" ($1$), "parallel" ($0$) or "prime". However, full information of $G$…
A module of a graph G is a set of vertices that have the same set of neighbours outside. Modules of a graphs form a so-called partitive family and thereby can be represented by a unique tree MD(G), called the modular decomposition tree.…
We give a fixed-parameter tractable algorithm that, given a parameter $k$ and two graphs $G_1,G_2$, either concludes that one of these graphs has treewidth at least $k$, or determines whether $G_1$ and $G_2$ are isomorphic. The running time…
As an extension of a classical tree-partition problem, we consider decompositions of graphs into edge-disjoint (rooted-)trees with an additional matroid constraint. Specifically, suppose we are given a graph $G=(V,E)$, a multiset…
Dynamic programming on various graph decompositions is one of the most fundamental techniques used in parameterized complexity. Unfortunately, even if we consider concepts as simple as path or tree decompositions, such dynamic programming…