Related papers: Tree decomposition of Reeb graphs, parametrized co…

The Subgraph Isomorphism problem asks, given a host graph G on n vertices and a pattern graph P on k vertices, whether G contains a subgraph isomorphic to P. The restriction of this problem to planar graphs has often been considered. After…

We consider the NP-hard Tree Containment problem that has important applications in phylogenetics. The problem asks if a given leaf-labeled network contains a subdivision of a given leaf-labeled tree. We develop a fast algorithm for the…

The tree of decomposition of a $k$-connected graph by a set $\mathfrak S$ of pairwise independent $k$-vertex cutsets is defined as follows. The vertices of this tree are cutsets of $\mathfrak S$ and parts of decomposition of the graph by…

This paper is concerned with long-time interest of us, especially, the author, in realizing graphs as Reeb graphs of real algebraic functions of certain nice classes. The Reeb graph of a differentiable function is the set consisting of all…

We introduce the tree distance, a new distance measure on graphs. The tree distance can be computed in polynomial time with standard methods from convex optimization. It is based on the notion of fractional isomorphism, a characterization…

Distance-hereditary graphs form an important class of graphs, from the theoretical point of view, due to the fact that they are the totally decomposable graphs for the split-decomposition. The previous best enumerative result for these…

We give new decomposition theorems for classes of graphs that can be transduced in first-order logic from classes of sparse graphs -- more precisely, from classes of bounded expansion and from nowhere dense classes. In both cases, the…

Arboreal networks are a generalization of rooted trees, defined by keeping the tree-like structure, but dropping the requirement for a single root. Just as the class of cographs is precisely the class of undirected graphs that can be…

The modular decomposition of a graph $G$ is a natural construction to capture key features of $G$ in terms of a labeled tree $(T,t)$ whose vertices are labeled as "series" ($1$), "parallel" ($0$) or "prime". However, full information of $G$…

In this paper we resolve the complexity of the isomorphism problem on all but finitely many of the graph classes characterized by two forbidden induced subgraphs. To this end we develop new techniques applicable for the structural and…

In the companion paper [Linear rank-width of distance-hereditary graphs I. A polynomial-time algorithm, Algorithmica 78(1):342--377, 2017], we presented a characterization of the linear rank-width of distance-hereditary graphs, from which…

Consider a collection of random variables attached to the vertices of a graph. The reconstruction problem requires to estimate one of them given `far away' observations. Several theoretical results (and simple algorithms) are available when…

Phylogenetic trees and networks are leaf-labelled graphs used to model evolution. Display graphs are created by identifying common leaf labels in two or more phylogenetic trees or networks. The treewidth of such graphs is bounded as a…

We say that a first order formula $\Phi$ defines a graph $G$ if $\Phi$ is true on $G$ and false on every graph $G'$ non-isomorphic with $G$. Let $D(G)$ be the minimal quantifier rank of a such formula. We prove that, if $G$ is a tree of…

Phylogenetic networks generalize phylogenetic trees, and have been introduced in order to describe evolution in the case of transfer of genetic material between coexisting species. There are many classes of phylogenetic networks, which can…

In phylogenetics, phylogenetic trees are rooted binary trees, whereas phylogenetic networks are rooted arbitrary acyclic digraphs. Edges are directed away from the root and leaves are uniquely labeled with taxa in phylogenetic networks. For…

For our own education, we reconstruct the Hopf algebra of Connes and Moscovici obtained by the action of vector fields on a crossed product of functions by diffeomorphisms. We extend the realization of that Hopf algebra in terms of rooted…

To investigate the topological structure of planar polygon decomposition on trapezoids, which is formed by height functions. We use the oriented Reeb graph of the function with a marked vertex. We describe all possible optimal Reeb graphs…

We study the question of approximating a compact geodesic metric space by metric graphs satisfying a uniform upper bound on their first Betti number. We prove that, up to a suitable multiplicative constant, Reeb graphs of distance functions…

The tree-cut width of a graph is a graph parameter defined by Wollan [J. Comb. Theory, Ser. B, 110:47-66, 2015] with the help of tree-cut decompositions. In certain cases, tree-cut width appears to be more adequate than treewidth as an…