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Biological membranes are shaped by various proteins that either generate inward or outward membrane curvature. In this article, we investigate the membrane morphologies induced by mixtures of arc-shaped particles with coarse-grained…
Cellular automata have been useful artificial models for exploring how relatively simple rules combined with spatial memory can give rise to complex emergent patterns. Moreover, studying the dynamics of how rules emerge under artificial…
Experimental evidence shows that there is a feedback between cell shape and cell motion. How this feedback impacts the collective behavior of dense cell monolayers remains an open question. We investigate the effect of a feedback that tends…
Edge reconstruction modifies the electronic properties of finite graphene samples. We formulate a low-energy theory of the reconstructed zigzag edge by deriving the modified boundary condition to the Dirac equation. If the unit cell size of…
The innumerable shapes of plant leaves present a challenge to the explanatory power of biophysical theory. A model is needed that can produce these shapes with a small set of parameters. This paper presents a simple model of leaf shape…
We study the physics of 2 and 3 mutually intersecting conformal defects forming wedges and corners in general dimension. For 2 defects we derive the beta function of the edge interactions for infinite and semi-infinite wedges and study them…
Cellular automata (CA) have been utilized for decades as discrete models of many physical, mathematical, chemical, biological, and computing systems. The most widely known form of CA, the elementary cellular automaton (ECA), has been…
Topological and geometrical properties and the associated topological defects find a rapidly growing interest in studying the interplay between mechanics and the collective behavior of cells on the tissue level. We here test if well studied…
This paper completes a fundamental construction in Alexandrov geometry. Previously we gave a new construction of metric spaces with curvature bounds either above or below, namely warped products with intrinsic metric space base and fiber,…
We present a general theory for the equilibrium structure of cylindrical tubules and helical ribbons of chiral lipid membranes. This theory is based on a continuum elastic free energy that permits variations in the direction of molecular…
We have discovered a novel transition rule for binary cellular automata (CA) that yields self-replicating structures across two spatial and temporal scales from sparsely populated random initial conditions. Lower-level, shapeshifting…
We demonstrate how concepts of statistical mechanics of interacting particles can have important implications in the choice of interaction potentials to model qualitative properties of cell aggregates in theoretical biology. We illustrate…
Electric pulses in biological cells (action potentials) have been reported to be accompanied by a propagating cell-surface deformation with a nano-scale amplitude. Typically, this cell surface is covered by external layers of polymer…
We study genus 2 covers of relative elliptic curves over an arbitrary base in which 2 is invertible. Particular emphasis lies on the case that the covering degree is 2. We show that the data in the "basic construction" of genus 2 covers of…
We investigate how thin sheets of arbitrary shapes morph under the isotropic in-plane expansion of their top surface, which may represent several stimuli such as nonuniform heating, local swelling and differential growth. Inspired by…
Main subject of the paper is a (strong) Morse function on a compact manifold with boundary. We construct a cellular structure and discuss its algebraic properties in this paper. Also we get an estimation on Arnold's question on a number of…
As the cover of embryos and adult organisms, epithelial tissues are subjected to substantial mechanical forces in tissue morphogenesis. However, the finite deformation behaviors of epithelial tissues remain largely unexplored. This study…
We study a class of corner growth models in which the weights are either all exponentially or all geometrically distributed. The parameter of the distribution at site $(i, j)$ is $a_i+b_j$ in the exponential case and $a_ib_j$ in the…
In this paper, linear Cellular Automta (CA) rules are recursively generated using a binary tree rooted at "0". Some mathematical results on linear as well as non-linear CA rules are derived. Integers associated with linear CA rules are…
We study the algebraic invariants namely depth, Stanley depth, regularity and projective dimension of the residue class rings of the edge ideals associated with the corona product of various classes of graphs with any graph. We also give an…