Related papers: Sorting permutations with a transposition tree
Let $\Gamma$ be a Cayley graph of the permutation group generated by a transposition tree $T$ on $n$ vertices. In an oft-cited paper \cite{Akers:Krishnamurthy:1989} (see also \cite{Hahn:Sabidussi:1997}), it is shown that the diameter of the…
A problem of practical and theoretical interest is to determine or estimate the diameter of various families of Cayley networks. The previously known estimate for the diameter of Cayley graphs generated by transposition trees is an upper…
A permutation $\pi$ over alphabet $\Sigma = {1,2,3,\ldots,n}$, is a sequence where every element $x$ in $\Sigma$ occurs exactly once. $S_n$ is the symmetric group consisting of all permutations of length $n$ defined over $\Sigma$. $I_n$ =…
A Genome rearrangement problem studies large-scale mutations on a set of DNAs in living organisms. Various rearrangements like reversals, transpositions, translocations, fissions, fusions, and combinations and different variations have been…
The Transposition Distance Problem (TDP) is a classical problem in genome rearrangements which seeks to determine the minimum number of transpositions needed to transform a linear chromosome into another represented by the permutations…
Given a rooted tree and a ranking of its leaves, what is the minimum number of inversions of the leaves that can be attained by ordering the tree? This variation of the problem of counting inversions in arrays originated in mathematical…
The circular descent of a permutation $\sigma$ is a set $\{\sigma(i)\mid \sigma(i)>\sigma(i+1)\}$. In this paper, we focus on the enumerations of permutations by the circular descent set. Let $cdes_n(S)$ be the number of permutations of…
We study preimages of permutations under the bubblesort operator $\mathbf{B}$. We achieve a description of these preimages much more complete than what is known for the more complicated sorting operators $\mathbf{S}$ (stacksort) and…
Given a generator set $S$ of the symmetric group ${\rm{Sym}}_n$, every permutation $\pi\in {\rm{Sym}_n}$ is a word (product of elements) of $S$. A positive integer $d(\pi)$ is associated with each $\pi\in{\rm{Sym}_n}$ taking the length of…
A permutation array $A$ is a set of permutations on a finite set $\Omega$, say of size $n$. Given distinct permutations $\pi, \sigma\in \Omega$, we let $hd(\pi, \sigma) = |\{ x\in \Omega: \pi(x) \ne \sigma(x) \}|$, called the Hamming…
We consider the problem of upper bounding the number of circular transpositions needed to sort a permutation. It is well known that any permutation can be sorted using at most $n(n-1)/2$ adjacent transpositions. We show that, if we allow…
As well known the rotation distance D(S,T) between two binary trees S, T of n vertices is the minimum number of rotations of pairs of vertices to transform S into T. We introduce the new operation of chain rotation on a tree, involving two…
We use a method for determining the number of preimages of any permutation under the stack-sorting map in order to obtain recursive upper bounds for the numbers $W_t(n)$ and $W_t(n,k)$ of $t$-stack sortable permutations of length $n$ and…
Phylogenetic trees are frequently used to model evolution. Such trees are typically reconstructed from data like DNA, RNA, or protein alignments using methods based on criteria like maximum parsimony (amongst others). Maximum parsimony has…
We consider the well-studied pattern counting problem: given a permutation $\pi \in \mathbb{S}_n$ and an integer $k > 1$, count the number of order-isomorphic occurrences of every pattern $\tau \in \mathbb{S}_k$ in $\pi$. Our first result…
In genome rearrangements, the mutational event transposition swaps two adjacent blocks of genes in one chromosome. The Transposition Distance Problem (TDP) aims to find the minimum number of transpositions required to transform one…
Given a permutation $\sigma$, its corresponding binary search tree is obtained by recursively inserting the values $\sigma(1),\ldots,\sigma(n)$ into a binary tree so that the label of each node is larger than the labels of its left subtree…
In comparative genomics, a transposition is an operation that exchanges two consecutive sequences of genes in a genome. The transposition distance, that is, the minimum number of transpositions needed to transform a genome into another, is,…
A number of fields, including the study of genome rearrangements and the design of interconnection networks, deal with the connected problems of sorting permutations in "as few moves as possible", using a given set of allowed operations, or…
For a tree $T$, we show that for many positive integer values of $n$, and an integer $s \geq 2$, the higher topological complexity $TC_s$ of the unordered configuration spaces of trees $U\mathcal{C}^nT$, is maximal. In other words, we prove…