Related papers: Sorting permutations with a transposition tree
A sorting network is a shortest path from 12...n to n...21 in the Cayley graph of S_n generated by nearest-neighbour swaps. We prove that for a uniform random sorting network, as n->infinity the space-time process of swaps converges to the…
An evolutionary tree is a rooted tree where each internal vertex has at least two children and where the leaves are labeled with distinct symbols representing species. Evolutionary trees are useful for modeling the evolutionary history of…
Given a finite group $G$ and a set $A$ of generators, the diameter diam$(\Gamma(G,A))$ of the Cayley graph $\Gamma(G,A)$ is the smallest $\ell$ such that every element of $G$ can be expressed as a word of length at most $\ell$ in $A \cup…
How can we effectively find the best structures in tree models? Tree models have been favored over complex black box models in domains where interpretability is crucial for making irreversible decisions. However, searching for a tree…
We consider the number of passes a permutation needs to take through a stack if we only pop the appropriate output values and start over with the remaining entries in their original order. We define a permutation $\pi$ to be $k$-pass…
Given a graph where every vertex has exactly one labeled token, how can we most quickly execute a given permutation on the tokens? In (sequential) token swapping, the goal is to use the shortest possible sequence of swaps, each of which…
Compositions of tree-walking tree transducers form a hierarchy with respect to the number of transducers in the composition. As main technical result it is proved that any such composition can be realized as a linear bounded composition,…
The input to the token swapping problem is a graph with vertices $v_1, v_2, \ldots, v_n$, and $n$ tokens with labels $1, 2, \ldots, n$, one on each vertex. The goal is to get token $i$ to vertex $v_i$ for all $i= 1, \ldots, n$ using a…
A tree $\sigma$-spanner of a positively real-weighted $n$-vertex and $m$-edge undirected graph $G$ is a spanning tree $T$ of $G$ which approximately preserves (i.e., up to a multiplicative stretch factor $\sigma$) distances in $G$. Tree…
Let $G =<S>$ be a solvable permutation group of the symmetric group $S_n$ given as input by the generating set $S$. We give a deterministic polynomial-time algorithm that computes an \emph{expanding generating set} of size $\tilde{O}(n^2)$…
We consider the following general model of a sorting procedure: we fix a hereditary permutation class $\mathcal{C}$, which corresponds to the operations that the procedure is allowed to perform in a single step. The input of sorting is a…
Let $S_n$ be the symmetric group of all permutations of $\{1, \cdots, n\}$ with two generators: the transposition switching $1$ with $2$ and the cyclic permutation sending $k$ to $k+1$ for $1\leq k\leq n-1$ and $n$ to $1$ (denoted by…
We present a deterministic comparison-based algorithm that sorts sequences avoiding a fixed permutation $\pi$ in linear time, even if $\pi$ is a priori unkown. Moreover, the dependence of the multiplicative constant on the pattern $\pi$…
The Spanning Tree Congestion (STC) problem is the following NP-hard problem: given a graph $G$, construct a spanning tree $T$ of $G$ minimizing its maximum edge congestion where the congestion of an edge $e\in T$ is the number of edges $uv$…
Accessibility percolation is a new type of percolation problem inspired by evolutionary biology. To each vertex of a graph a random number is assigned and a path through the graph is called accessible if all numbers along the path are in…
Let $S$ be a set of transpositions that generates the symmetric group $S_n$, where $n \ge 3$. The transposition graph $T(S)$ is defined to be the graph with vertex set $\{1,\ldots,n\}$ and with vertices $i$ and $j$ being adjacent in $T(S)$…
Consider the following partial "sorting algorithm" on permutations: take the first entry of the permutation in one-line notation and insert it into the position of its own value. Continue until the first entry is 1. This process imposes a…
We study the connections between sorting and the binary search tree (BST) model, with an aim towards showing that the fields are connected more deeply than is currently appreciated. While any BST can be used to sort by inserting the keys…
A phylogenetic tree shows the evolutionary relationships among species. Internal nodes of the tree represent speciation events and leaf nodes correspond to species. A goal of phylogenetics is to combine such trees into larger trees, called…
This article focuses on properties and structures of trees with maximum mean subtree order in a given family; such trees are called optimal in the family. Our main goal is to describe the structure of optimal trees in $\mathcal{T}_n$ and…