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Here we present a new fixed parameter tractable algorithm to compute the hybridization number r of two rooted, not necessarily binary phylogenetic trees on taxon set X in time (6^r.r!).poly(n)$, where n=|X|. The novelty of this approach is…

Quantitative Methods · Quantitative Biology 2012-07-26 Teresa Piovesan , Steven Kelk

We propose new succinct representations of ordinal trees, which have been studied extensively. It is known that any $n$-node static tree can be represented in $2n + o(n)$ bits and a number of operations on the tree can be supported in…

Data Structures and Algorithms · Computer Science 2010-09-27 Gonzalo Navarro , Kunihiko Sadakane

An equitable graph coloring is a proper vertex coloring of a graph G where the sizes of the color classes differ by at most one. The equitable chromatic number is the smallest number k such that G admits such equitable k-coloring. We focus…

Combinatorics · Mathematics 2016-10-31 Arie Koster , Robert Schweidweiler , Martin Tieves

Active search formalizes a specialized active learning setting where the goal is to collect members of a rare, valuable class. The state-of-the-art algorithm approximates the optimal Bayesian policy in a budget-aware manner, and has been…

Machine Learning · Computer Science 2024-05-27 Quan Nguyen , Anindya Sarkar , Roman Garnett

Uniquely represented data structures represent each logical state with a unique storage state. We study the problem of maintaining a dynamic set of $n$ keys from a totally ordered universe in this context. We introduce a two-layer data…

Data Structures and Algorithms · Computer Science 2023-03-09 Roodabeh Safavi , Martin P. Seybold

In several applications of automatic diagnosis and active learning a central problem is the evaluation of a discrete function by adaptively querying the values of its variables until the values read uniquely determine the value of the…

Data Structures and Algorithms · Computer Science 2014-07-29 Ferdinando Cicalese , Eduardo Laber , Aline Medeiros Saettler

Tree-chromatic number is a chromatic version of treewidth, where the cost of a bag in a tree-decomposition is measured by its chromatic number rather than its size. Path-chromatic number is defined analogously. These parameters were…

Combinatorics · Mathematics 2020-07-10 Tony Huynh , Bruce Reed , David R. Wood , Liana Yepremyan

Graph clustering involves the task of dividing nodes into clusters, so that the edge density is higher within clusters as opposed to across clusters. A natural, classic and popular statistical setting for evaluating solutions to this…

Machine Learning · Statistics 2016-11-17 Yudong Chen , Sujay Sanghavi , Huan Xu

We consider the problem of enumerating, for a given directed graph $G=(V,E)$ and a node $r\in V$, all directed spanning trees of $G$ rooted at $r$. For undirected graphs, the corresponding problem of enumerating all spanning trees has…

Data Structures and Algorithms · Computer Science 2026-03-13 Paweł Gawrychowski , Marcin Knapik

Shifted combinatorial optimization is a new nonlinear optimization framework which is a broad extension of standard combinatorial optimization, involving the choice of several feasible solutions at a time. This framework captures well…

Computational Complexity · Computer Science 2021-02-25 Jakub Gajarský , Petr Hliněný , Martin Koutecký , Shmuel Onn

We give practical, efficient algorithms that automatically determine the asymptotic distributed round complexity of a given locally checkable graph problem in the $[\Theta(\log n), \Theta(n)]$ region, in two settings. We present one…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-09-05 Alkida Balliu , Sebastian Brandt , Yi-Jun Chang , Dennis Olivetti , Jan Studený , Jukka Suomela

We introduce the lazy search tree data structure. The lazy search tree is a comparison-based data structure on the pointer machine that supports order-based operations such as rank, select, membership, predecessor, successor, minimum, and…

Data Structures and Algorithms · Computer Science 2020-10-20 Bryce Sandlund , Sebastian Wild

Given a dynamic graph subject to edge insertions and deletions, we show how to update an implicit representation of a proper vertex colouring, such that colours of vertices are computable upon query time. We give a deterministic algorithm…

Data Structures and Algorithms · Computer Science 2022-11-15 Aleksander B. G. Christiansen , Krzysztof D. Nowicki , Eva Rotenberg

As data volumes continue to grow rapidly, traditional search algorithms, like the red-black tree and B+ Tree, face increasing challenges in performance, especially in big data scenarios with intensive storage access. This paper presents the…

Databases · Computer Science 2025-04-02 Songpeng Liu

We study the rent-or-buy variant of the online Steiner forest problem on node- and edge-weighted graphs. For $n$-node graphs with at most $\bar{n}$ non-zero node-weights, and at most $\tilde{k}$ different arriving terminal pairs, we obtain…

Data Structures and Algorithms · Computer Science 2025-07-14 Sander Borst , Moritz Venzin

We consider the following generalization of the binary search problem. A search strategy is required to locate an unknown target node $t$ in a given tree $T$. Upon querying a node $v$ of the tree, the strategy receives as a reply an…

Data Structures and Algorithms · Computer Science 2017-02-28 Dariusz Dereniowski , Adrian Kosowski , Przemyslaw Uznanski , Mengchuan Zou

Submodular maximization is a general optimization problem with a wide range of applications in machine learning (e.g., active learning, clustering, and feature selection). In large-scale optimization, the parallel running time of an…

Data Structures and Algorithms · Computer Science 2023-04-11 Matthew Fahrbach , Vahab Mirrokni , Morteza Zadimoghaddam

We consider the parameterised complexity of several list problems on graphs, with parameter treewidth or pathwidth. In particular, we show that List Edge Chromatic Number and List Total Chromatic Number are fixed parameter tractable,…

Computational Complexity · Computer Science 2016-08-05 Kitty Meeks , Alexander Scott

In the online bipartite matching with reassignments problem, an algorithm is initially given only one side of the vertex set of a bipartite graph; the vertices on the other side are revealed to the algorithm one by one, along with its…

Data Structures and Algorithms · Computer Science 2020-03-12 Yongho Shin , Kangsan Kim , Seungmin Lee , Hyung-Chan An

We show that there exist linear-time algorithms that compute the strong chromatic index and a maximum induced matching of tree-cographs when the decomposition tree is a part of the input. We also show that there exists an efficient…

Data Structures and Algorithms · Computer Science 2011-10-11 Ton Kloks , Chin-Ting Ung , Yue-Li Wang
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