A simple fixed parameter tractable algorithm for computing the hybridization number of two (not necessarily binary) trees
Quantitative Methods
2012-07-26 v1 Combinatorics
Populations and Evolution
Abstract
Here we present a new fixed parameter tractable algorithm to compute the hybridization number r of two rooted, not necessarily binary phylogenetic trees on taxon set X in time (6^r.r!).poly(n)$, where n=|X|. The novelty of this approach is its use of terminals, which are maximal elements of a natural partial order on X, and several insights from the softwired clusters literature. This yields a surprisingly simple and practical bounded-search algorithm and offers an alternative perspective on the underlying combinatorial structure of the hybridization number problem.
Keywords
Cite
@article{arxiv.1207.6090,
title = {A simple fixed parameter tractable algorithm for computing the hybridization number of two (not necessarily binary) trees},
author = {Teresa Piovesan and Steven Kelk},
journal= {arXiv preprint arXiv:1207.6090},
year = {2012}
}