English

A simple fixed parameter tractable algorithm for computing the hybridization number of two (not necessarily binary) trees

Quantitative Methods 2012-07-26 v1 Combinatorics Populations and Evolution

Abstract

Here we present a new fixed parameter tractable algorithm to compute the hybridization number r of two rooted, not necessarily binary phylogenetic trees on taxon set X in time (6^r.r!).poly(n)$, where n=|X|. The novelty of this approach is its use of terminals, which are maximal elements of a natural partial order on X, and several insights from the softwired clusters literature. This yields a surprisingly simple and practical bounded-search algorithm and offers an alternative perspective on the underlying combinatorial structure of the hybridization number problem.

Keywords

Cite

@article{arxiv.1207.6090,
  title  = {A simple fixed parameter tractable algorithm for computing the hybridization number of two (not necessarily binary) trees},
  author = {Teresa Piovesan and Steven Kelk},
  journal= {arXiv preprint arXiv:1207.6090},
  year   = {2012}
}
R2 v1 2026-06-21T21:41:31.261Z