Kernelizations for the hybridization number problem on multiple nonbinary trees
Discrete Mathematics
2016-03-23 v3 Populations and Evolution
Abstract
Given a finite set , a collection of rooted phylogenetic trees on and an integer , the Hybridization Number problem asks if there exists a phylogenetic network on that displays all trees from and has reticulation number at most . We show two kernelization algorithms for Hybridization Number, with kernel sizes and respectively, with the number of input trees and their maximum outdegree. Experiments on simulated data demonstrate the practical relevance of these kernelization algorithms. In addition, we present an -time algorithm, with and some computable function of .
Keywords
Cite
@article{arxiv.1311.4045,
title = {Kernelizations for the hybridization number problem on multiple nonbinary trees},
author = {Leo van Iersel and Steven Kelk and Celine Scornavacca},
journal= {arXiv preprint arXiv:1311.4045},
year = {2016}
}