English

Kernelizations for the hybridization number problem on multiple nonbinary trees

Discrete Mathematics 2016-03-23 v3 Populations and Evolution

Abstract

Given a finite set XX, a collection T\mathcal{T} of rooted phylogenetic trees on XX and an integer kk, the Hybridization Number problem asks if there exists a phylogenetic network on XX that displays all trees from T\mathcal{T} and has reticulation number at most kk. We show two kernelization algorithms for Hybridization Number, with kernel sizes 4k(5k)t4k(5k)^t and 20k2(Δ+1)20k^2(\Delta^+-1) respectively, with tt the number of input trees and Δ+\Delta^+ their maximum outdegree. Experiments on simulated data demonstrate the practical relevance of these kernelization algorithms. In addition, we present an nf(k)tn^{f(k)}t-time algorithm, with n=Xn=|X| and ff some computable function of kk.

Keywords

Cite

@article{arxiv.1311.4045,
  title  = {Kernelizations for the hybridization number problem on multiple nonbinary trees},
  author = {Leo van Iersel and Steven Kelk and Celine Scornavacca},
  journal= {arXiv preprint arXiv:1311.4045},
  year   = {2016}
}
R2 v1 2026-06-22T02:08:45.555Z