Related papers: On chordal phylogeny graphs
An acyclic digraph in which every vertex has indegree at most $i$ and outdegree at most $j$ is called an $(i,j)$ digraph for some positive integers $i$ and $j$. The phylogeny graph of a digraph $D$ has $V(D)$ as the vertex set and an edge…
Hefner [K. A. S. Hefner, K. F. Jones, S. -R. Kim, R. J. Lundgren and F. S. Roberts: $(i,j)$ competition graphs, Discrete Applied Mathematics, 32, (1991) 241-262] characterized acyclic digraphs each vertex of which has inderee and outdegree…
If each vertex of an acyclic digraph has indegree at most $i$ and outdegree at most $j$, then it is called an $(i,j)$ digraph, which was introduced by Hefner~{\it et al.}~(1991). Whereas Hefner~{\it et al.} characterized $(i,j)$ digraphs…
Given an acyclic digraph $D$, the competition graph of $D$, denoted by $C(D)$, is the simple graph having vertex set $V(D)$ and edge set $\{uv \mid (u, w), (v, w) \in A(D) \text{ for some } w \in V(D) \}$. The phylogeny graph of an acyclic…
DNA graph has important contribution in completing the computational step of DNA sequencing process. Using $(\alpha,k)$-labeling, several families of digraphs have characterized as DNA graphs. Dicycles and dipaths are DNA graphs, rooted…
The competition graph of a doubly partial order is known to be an interval graph. The CCE graph and the niche graph of a doubly partial order are also known to be interval graphs if the graphs do not contain a cycle of length four and three…
An $acyclic$ edge coloring of a graph is a proper edge coloring such that there are no bichromatic cycle s. The \emph{acyclic chromatic index} of a graph is the minimum number k such that there is an acyclic e dge coloring using k colors…
Recent investigations in computational biology have focused on a family of 2-colored digraphs, called 2-colored best match graphs, which naturally arise from rooted phylogenetic trees. Actually the defining properties of such graphs are…
Chordal graphs are the graphs in which every cycle of length at least four has a chord. A set $S$ is a vertex separator for vertices $a$ and $b$ if the removal of $S$ of the graph separates $a$ and $b$ into distinct connected components. A…
A hole in a graph is an induced subgraph which is a cycle of length at least four. A graph is chordal if it contains no holes. Following McKee and Scheinerman (1993), we define the chordality of a graph $G$ to be the minimum number of…
The competition-common enemy graph (CCE graph) of a digraph $D$ is the graph with the vertex set $V(D)$ and an edge $uv$ if and only if $u$ and $v$ have a common predator and a common prey in $D$. If each vertex of a digraph $D$ has…
Mixed graphs can be seen as digraphs with arcs and edges (or digons, that is, two opposite arcs). In this paper, we consider the case where such graphs are bipartite and in which the undirected and directed degrees are one. The best graphs,…
Let $D=(V,A)$ be an acyclic digraph. For $x\in V$ define $e_{_{D}}(x)$ to be the difference of the indegree and the outdegree of $x$. An acyclic ordering of the vertices of $D$ is a one-to-one map $g: V \rightarrow [1,|V|] $ that has the…
An important topic in the design of efficient networks is the construction of $(d,k,+\epsilon )$-digraphs, i.e. $k$-geodetic digraphs with minimum out-degree $\geq d$ and order $M(d,k)+ \epsilon $, where $M(d,k)$ represents the Moore bound…
An orientation $D$ of a graph $G=(V,E)$ is a digraph obtained from $G$ by replacing each edge by exactly one of the two possible arcs with the same end vertices. For each $v \in V(G)$, the indegree of $v$ in $D$, denoted by $d^-_D(v)$, is…
An L(2, 1)-labeling of a graph is an assignment of nonnegative integers to the vertices of G such that adjacent vertices receive numbers differed by at least 2, and vertices at distance 2 are assigned distinct numbers. The L(2, 1)-labeling…
Suppose that D is an acyclic orientation of a graph G. An arc of D is called dependent if its reversal creates a directed cycle. Let m and M denote the minimum and the maximum of the number of dependent arcs over all acyclic orientations of…
For $t \ge 2$, let us call a digraph $D$ \emph{t-chordal} if all induced directed cycles in $D$ have length equal to $t$. In a previous paper, we asked for which $t$ it is true that $t$-chordal graphs with bounded clique number have bounded…
The dichromatic number of a digraph is the minimum integer $k$ such that it admits a $k$-dicolouring, i.e. a partition of its vertices into $k$ acyclic subdigraphs. We say that a digraph $D$ is a super-orientation of an undirected graph $G$…
Let $D$ be a digraph, let $p \geq 1$ be an integer, and let $f: V(D) \to \mathbb{N}_0^p$ be a vector function with $f=(f_1,f_2,\ldots,f_p)$. We say that $D$ has an $f$-partition if there is a partition $(D_1,D_2,\ldots,D_p)$ into induced…