Related papers: Lower bounds for trace reconstruction
The Gap-Hamming-Distance problem arose in the context of proving space lower bounds for a number of key problems in the data stream model. In this problem, Alice and Bob have to decide whether the Hamming distance between their $n$-bit…
We propose a list-decoding scheme for reconstruction codes in the context of uniform-tandem-duplication noise, which can be viewed as an application of the associative memory model to this setting. We find the uncertainty associated with…
This paper studies the problem of encoding messages into sequences which can be uniquely recovered from some noisy observations about their substrings. The observed reads comprise consecutive substrings with some given minimum overlap. This…
This paper concerns the problem of recovering an unknown but structured signal $x \in R^n$ from $m$ quadratic measurements of the form $y_r=|<a_r,x>|^2$ for $r=1,2,...,m$. We focus on the under-determined setting where the number of…
Locally repairable codes (LRC) have recently been a subject of intense research due to theoretical appeal and their application in distributed storage systems. In an LRC, any coordinate of a codeword can be recovered by accessing only few…
The interest in channel models in which the data is sent as an unordered set of binary strings has increased lately, due to emerging applications in DNA storage, among others. In this paper we analyze the minimal redundancy of binary codes…
Replicability requires that algorithmic conclusions remain consistent when rerun on independently drawn data. A central structural question is composition: given $k$ problems each admitting a $\rho$-replicable algorithm with sample…
In this paper, we consider a broadcasting process in which information is propagated from a given root node on a noisy tree network, and answer the question that whether the symbols at the nth level of the tree contain non-vanishing…
Alice and Bob want to know if two strings of length n are almost equal. That is, do they differ on \textit{at most} a bits? Let 0\leq a\leq n-1. We show that any deterministic protocol, as well as any error-free quantum protocol (C*…
A binary code Enc$:\{0,1\}^k \to \{0,1\}^n$ is $(0.5-\epsilon,L)$-list decodable if for all $w \in \{0,1\}^n$, the set List$(w)$ of all messages $m \in \{0,1\}^k$ such that the relative Hamming distance between Enc$(m)$ and $w$ is at most…
Quartet Reconstruction, the task of recovering a phylogenetic tree from smaller trees on four species called \textit{quartets}, is a well-studied problem in theoretical computer science with far-reaching connections to statistics, graph…
A new converse bound is presented for the two-user multiple-access channel under the average probability of error constraint. This bound shows that for most channels of interest, the second-order coding rate -- that is, the difference…
This paper considers a problem that relates to the theories of covering arrays, permutation patterns, Vapnik-Chervonenkis (VC) classes, and probability thresholds. Specifically, we want to find the number of subsets of [n]:={1,2,....,n} we…
Motivated by applications to DNA storage, we study reconstruction and list-reconstruction schemes for integer vectors that suffer from limited-magnitude errors. We characterize the asymptotic size of the intersection of error balls in…
Suppose an oracle knows a string $S$ that is unknown to us and that we want to determine. The oracle can answer queries of the form "Is $s$ a substring of $S$?". In 1995, Skiena and Sundaram showed that, in the worst case, any algorithm…
An encoder observes a point pattern---a finite number of points in the interval $[0,T]$---which is to be described to a reconstructor using bits. Based on these bits, the reconstructor wishes to select a subset of $[0,T]$ that contains all…
Reconstructing continuous signals from a small number of discrete samples is a fundamental problem across science and engineering. In practice, we are often interested in signals with 'simple' Fourier structure, such as bandlimited,…
The reduction of the fragment assembly problem to (variations of) the classical Eulerian trail problem [Pevzner et al., PNAS 2001] has led to remarkable progress in genome assembly. This reduction employs the notion of de Bruijn graph…
Motivated by the sequence reconstruction problem from traces in DNA-based storage, we consider the problem of designing codes for the deletion channel when multiple observations (or traces) are available to the decoder. We propose simple…
This short note modifies a reconstruction method by the author (Comm. PDE, 45(9):1118-1133, 2020), for reconstructing piecewise constant conductivities in the Calder\'on problem (electrical impedance tomography). In the former paper, a…