Related papers: Lower bounds for trace reconstruction
Emerging applications in manufacturing, wireless communication, and molecular data storage require robust coding schemes that remain effective under physical distortions where codewords may be arbitrarily fragmented and partially missing.…
In the distributed triangle detection problem, we have an $n$-vertex network $G=(V,E)$ with one player for each vertex of the graph who sees the edges incident on the vertex. The players communicate in synchronous rounds using the edges of…
Nanopore sequencers are emerging as promising new platforms for high-throughput sequencing. As with other technologies, sequencer errors pose a major challenge for their effective use. In this paper, we present a novel information theoretic…
Consistent reconstruction is a method for producing an estimate $\widetilde{x} \in \mathbb{R}^d$ of a signal $x\in \mathbb{R}^d$ if one is given a collection of $N$ noisy linear measurements $q_n = \langle x, \varphi_n \rangle +…
Fractional repetition (FR) codes are a class of repair efficient erasure codes that can recover a failed storage node with both optimal repair bandwidth and complexity. In this paper, we study the minimum distance of FR codes, which is the…
Given a sequence $s_1$ of $n$ letters drawn i.i.d. from an alphabet of size $\sigma$ and a mutated substring $s_2$ of length $m < n$, we often want to recover the mutation history that generated $s_2$ from $s_1$. Modern sequence aligners…
Correcting insertions/deletions as well as substitution errors simultaneously plays an important role in DNA-based storage systems as well as in classical communications. This paper deals with the fundamental task of constructing codes that…
An unknown vector f in R^n can be recovered from corrupted measurements y = Af + e where A^(m*n)(m>n) is the coding matrix if the unknown error vector e is sparse. We investigate the relationship of the fraction of errors and the recovering…
Motivated by polymer-based data-storage platforms that use chains of binary synthetic polymers as the recording media and read the content via tandem mass spectrometers, we propose a new family of codes that allows for unique string…
In the communication problem $\mathbf{UR}$ (universal relation) [KRW95], Alice and Bob respectively receive $x, y \in\{0,1\}^n$ with the promise that $x\neq y$. The last player to receive a message must output an index $i$ such that…
Phylogenetic trees and networks are graphs used to model evolutionary relationships, with trees representing strictly branching histories and networks allowing for events in which lineages merge, called reticulation events. While the…
Motivated by the problem of filtering candidate pairs in inner product similarity joins we study the following inner product estimation problem: Given parameters $d\in {\bf N}$, $\alpha>\beta\geq 0$ and unit vectors $x,y\in {\bf R}^{d}$…
The input-constrained binary erasure channel (BEC) with strictly causal feedback is studied. The channel input sequence must satisfy the $(0,k)$-runlength limited (RLL) constraint, i.e., no more than $k$ consecutive `$0$'s are allowed. The…
It is well known that a band-limited signal can be reconstructed from its uniformly spaced samples if the sampling rate is sufficiently high. More recently, it has been proved that one can reconstruct a 1D band-limited signal even if the…
We develop upper bounds on code size for an independent and identically distributed deletion and insertion channels for a given code length and target frame error probability. The bounds are obtained as a variation of a general converse…
Repairing Reed-Solomon codes with low bandwidth is a central challenge in distributed storage. Following the trace-repair framework of Guruswami and Wootters (2017), recent works by Lin (2023) and Liu-Wan-Xing (2024) provided significant…
Two-dimensional error-correcting codes, where codewords are represented as $n \times n$ arrays over a $q$-ary alphabet, find important applications in areas such as QR codes, DNA-based storage, and racetrack memories. Among the possible…
We resolve the randomized one-way communication complexity of Dynamic Time Warping (DTW) distance. We show that there is an efficient one-way communication protocol using $\widetilde{O}(n/\alpha)$ bits for the problem of computing an…
Distribution testing is a fundamental statistical task with many applications, but we are interested in a variety of problems where systematic mislabelings of the sample prevent us from applying the existing theory. To apply distribution…
We investigate the structure and reconstruction complexity of Manacher arrays. First, we establish a combinatorial lower bound, proving that the number of rooted tandem repeat trees with $n+1$ genes exceeds the number of distinct Manacher…