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Insects have long been recognized for their ability to navigate and return home using visual cues from their nest's environment. However, the precise mechanism underlying this remarkable homing skill remains a subject of ongoing…

Robotics · Computer Science 2024-05-08 Michiel Firlefyn , Jesse Hagenaars , Guido de Croon

High-throughput methods for yielding the set of connections in a neural system, the connectome, are now being developed. This tutorial describes ways to analyze the topological and spatial organization of the connectome at the macroscopic…

Neurons and Cognition · Quantitative Biology 2011-12-23 Marcus Kaiser

Networked systems display complex patterns of interactions between a large number of components. In physical networks, these interactions often occur along structural connections that link components in a hard-wired connection topology,…

Neurons and Cognition · Quantitative Biology 2018-04-03 Jason Kim , Jonathan M. Soffer , Ari E. Kahn , Jean M. Vettel , Fabio Pasqualetti , Danielle S. Bassett

One of the central objectives of contemporary neuroimaging research is to create predictive models that can disentangle the connection between patterns of functional connectivity across the entire brain and various behavioral traits.…

Individual differences in human intelligence can be modeled and predicted from in vivo neurobiological connectivity. Many established modeling frameworks for predicting intelligence, however, discard higher-order information about…

Neurons and Cognition · Quantitative Biology 2022-03-07 Evan D. Anderson , Ramsey Wilcox , Anuj Nayak , Christopher Zwilling , Pablo Robles-Granda , Been Kim , Lav R. Varshney , Aron K. Barbey

Neural circuits can be reconstructed from brain images acquired by serial section electron microscopy. Image analysis has been performed by manual labor for half a century, and efforts at automation date back almost as far. Convolutional…

Computer Vision and Pattern Recognition · Computer Science 2019-05-01 Kisuk Lee , Nicholas Turner , Thomas Macrina , Jingpeng Wu , Ran Lu , H. Sebastian Seung

Many of the competitive neural network consists of spatially arranged neurons. The weigh matrix that connects cells represents local excitation and long-range inhibition. They are known as soft-winner-take-all networks and shown to exhibit…

Neural and Evolutionary Computing · Computer Science 2019-07-10 N. Joshi

In this study we adopt predictive modelling to identify simultaneously commonalities and differences in multi-modal brain networks acquired within subjects. Typically, predictive modelling of functional connectomes from structural…

Neurons and Cognition · Quantitative Biology 2019-11-06 Fani Deligianni , Jonathan D. Clayden , Guang-Zhong Yang

Connectomics aims to recover a complete set of synaptic connections within a dataset imaged by volume electron microscopy. Many systems have been proposed for locating synapses, and recent research has included a way to identify the…

Computer Vision and Pattern Recognition · Computer Science 2019-11-25 Nicholas Turner , Kisuk Lee , Ran Lu , Jingpeng Wu , Dodam Ih , H. Sebastian Seung

We study a wide field motion sensitive neuron in the visual system of the blowfly {\em Calliphora vicina}. By rotating the fly on a stepper motor outside in a wooded area, and along an angular motion trajectory representative of natural…

Biological Physics · Physics 2007-05-23 G. D. Lewen , W. Bialek , R. R. de Ruyter van Steveninck

Due to the dynamic nature of biological systems, biological networks underlying temporal process such as the development of {\it Drosophila melanogaster} can exhibit significant topological changes to facilitate dynamic regulatory…

Molecular Networks · Quantitative Biology 2009-01-07 Amr Ahmed , Le Song , Eric P. Xing

Accurate segmentation of retinal vessels is a basic step in Diabetic retinopathy(DR) detection. Most methods based on deep convolutional neural network (DCNN) have small receptive fields, and hence they are unable to capture global context…

Computer Vision and Pattern Recognition · Computer Science 2019-04-12 Yun Jiang , Ning Tan , Tingting Peng , Hai Zhang

Efforts to automate the reconstruction of neural circuits from 3D electron microscopic (EM) brain images are critical for the field of connectomics. An important computation for reconstruction is the detection of neuronal boundaries. Images…

Computer Vision and Pattern Recognition · Computer Science 2015-08-21 Kisuk Lee , Aleksandar Zlateski , Ashwin Vishwanathan , H. Sebastian Seung

Learning to detect content-independent transformations from data is one of the central problems in biological and artificial intelligence. An example of such problem is unsupervised learning of a visual motion detector from pairs of…

Neural and Evolutionary Computing · Computer Science 2021-02-11 Yanis Bahroun , Anirvan M. Sengupta , Dmitri B. Chklovskii

Predicting the evolution of the brain network, also called connectome, by foreseeing changes in the connectivity weights linking pairs of anatomical regions makes it possible to spot connectivity-related neurological disorders in earlier…

Machine Learning · Computer Science 2021-09-17 Şeymanur Aktı , Doğay Kamar , Özgür Anıl Özlü , Ihsan Soydemir , Muhammet Akcan , Abdullah Kul , Islem Rekik

Insects, such as fruit flies and honey bees, can solve simple associative learning tasks and learn abstract concepts such as "sameness" and "difference", which is viewed as a higher-order cognitive function and typically thought to depend…

Computer Vision and Pattern Recognition · Computer Science 2021-09-15 Jinyung Hong , Theodore P. Pavlic

Here we show a method of directing the edges of the connectomes, prepared from diffusion tensor imaging (DTI) datasets from the human brain. Before the present work, no high-definition directed braingraphs (or connectomes) were published,…

Neurons and Cognition · Quantitative Biology 2016-09-29 Balázs Szalkai , Csaba Kerepesi , Bálint Varga , Vince Grolmusz

Studies of social and group behavior in interacting organisms require high-throughput analysis of the motion of a large number of individual subjects. Computer vision techniques offer solutions to specific tracking problems, and allow…

Quantitative Methods · Quantitative Biology 2015-06-12 Yi Deng , Philip Coen , Mingzhai Sun , Joshua W. Shaevitz

State-of-the-art (SOTA) object detection methods have succeeded in several applications at the price of relying on heavyweight neural networks, which makes them inefficient and inviable for many applications with computational resource…

There has been an explosion of interest in functional Magnetic Resonance Imaging (MRI) during the past two decades. Naturally, this has been accompanied by many major advances in the understanding of the human connectome. These advances…

Machine Learning · Statistics 2016-10-31 Ricardo Pio Monti , Romy Lorenz , Christoforos Anagnostopoulos , Robert Leech , Giovanni Montana