Related papers: From unicellular fatgraphs to trees
We consider the problem of untangling a given (non-planar) straight-line circular drawing $\delta_G$ of an outerplanar graph $G=(V, E)$ into a planar straight-line circular drawing by shifting a minimum number of vertices to a new position…
Line graphs are an alternative representation of graphs where each vertex of the original (root) graph becomes an edge. However not all graphs have a corresponding root graph, hence the transformation from graphs to line graphs is not…
We consider unimodular random rooted trees (URTs) and invariant forests in Cayley graphs. We show that URTs of bounded degree are the same as the law of the component of the root in an invariant percolation on a regular tree. We use this to…
Many multivariate data such as social and biological data exhibit complex dependencies that are best characterized by graphs. Unlike sequential data, graphs are, in general, unordered structures. This means we can no longer use classic,…
Let $G$ be an undirected simple connected graph. We say a vertex $u$ is eccentric to a vertex $v$ in $G$ if $d(u,v)=\max\{d(v,w): w\in V(G)\}$. The eccentric graph, $E(G)$ of $G$ is a graph defined on the same vertex set as of $G$ and two…
For a graph $G$, the $\ell$-deck of $G$ is the multiset of induced subgraphs on $G$ having $\ell$ vertices. Recently, Groenland et al. proved that any tree can be reconstructed from its $(8/9+o(1))n$-deck. For the particular case of…
The Bad Triangle Transversal (BTT) problem asks for the smallest set of edges that need to be removed from a given signed graph, so that the resulting graph does not have a bad triangle. Here, a bad triangle is a triangle with exactly one…
Phylogenetic networks are a generalization of phylogenetic trees that are used to represent non-tree-like evolutionary histories that arise in organisms such as plants and bacteria, or uncertainty in evolutionary histories. An…
The contact graph of a packing of translates of a convex body in Euclidean $d$-space $\mathbb E^d$ is the simple graph whose vertices are the members of the packing, and whose two vertices are connected by an edge if the two members touch…
The \emph{distance matrix} of a simple connected graph $G$ is $D(G)=(d_{ij})$, where $d_{ij}$ is the distance between the vertices $i$ and $j$ in $G$. We consider a weighted tree $T$ on $n$ vertices with edge weights are square matrix of…
Good representations for phylogenetic trees and networks are important for optimizing storage efficiency and implementation of scalable methods for the inference and analysis of evolutionary trees for genes, genomes and species. We…
There are several tools available to infer phylogenetic trees, which depict the evolutionary relationships among biological entities such as viral and bacterial strains in infectious outbreaks, or cancerous cells in tumor progression trees.…
Understanding the evolution of a set of genes or species is a fundamental problem in evolutionary biology. The problem we study here takes as input a set of trees describing {possibly discordant} evolutionary scenarios for a given set of…
We consider the in-plane motion of elastic strings on tree-like network, observed from the 'leaves'. We investigate the inverse problem of recovering not only the physical properties i.e. the 'optical lengths' of each string, but also the…
Differential growth processes play a prominent role in shaping leaves and biological tissues. Using both analytical and numerical calculations, we consider the shapes of closed, elastic strips which have been subjected to an inhomogeneous…
We prove that every graph which admits a tree-decomposition into finite parts has a rooted tree-decomposition into finite parts that is linked, tight and componental. As an application, we obtain that every graph without half-grid minor has…
We study a generalization of the classic Spanning Tree problem that allows for a non-uniform failure model. More precisely, edges are either \emph{safe} or \emph{unsafe} and we assume that failures only affect unsafe edges. In Unweighted…
A permutation graph is a graph whose edges are given by inversions of a permutation. We study the Abelian sandpile model (ASM) on such graphs. We exhibit a bijection between recurrent configurations of the ASM on permutation graphs and the…
We study the problem of gradually representing a complex graph as a sequence of drawings of small subgraphs whose union is the complex graph. The sequence of drawings is called \emph{storyplan}, and each drawing in the sequence is called a…
Rotation distances measure the differences in structure between rooted ordered binary trees. The one-dimensional skeleta of associahedra are rotation graphs, where two vertices representing trees are connected by an edge if they differ by a…