Related papers: From unicellular fatgraphs to trees

For a graph $G = (V, E)$, the $\gamma$-graph of $G$, denoted $G(\gamma) = (V(\gamma), E(\gamma))$, is the graph whose vertex set is the collection of minimum dominating sets, or $\gamma$-sets of $G$, and two $\gamma$-sets are adjacent in…

The visual complexity of a graph drawing can be measured by the number of geometric objects used for the representation of its elements. In this paper, we study planar graph drawings where edges are represented by few segments. In such a…

Let $H$ be a fixed graph. The $H$-Transversal problem, given a graph $G$, asks to remove the smallest number of vertices from $G$ so that $G$ does not contain $H$ as a subgraph. While a simple $|V(H)|$-approximation algorithm exists and is…

For a hereditary graph class $\mathcal{H}$, the $\mathcal{H}$-elimination distance of a graph $G$ is the minimum number of rounds needed to reduce $G$ to a member of $\mathcal{H}$ by removing one vertex from each connected component in each…

We show that the vertices of every planar graph can be partitioned into two sets, each inducing a so-called triangle-forest, i.e., a graph with no cycles of length more than three. We further discuss extensions to locally planar graphs.…

We prove two results about transforming any convex polyhedron, modeled as a linkage L of its edges. First, if we subdivide each edge of L in half, then L can be continuously flattened into a plane. Second, if L is equilateral and we again…

Tree-width and path-width are well-known graph parameters. Many NP-hard graph problems allow polynomial-time solutions, when restricted to graphs of bounded tree-width or bounded path-width. In this work, we study the behavior of tree-width…

An arborescence in a digraph is an acyclic arc subset in which every vertex execpt a root has exactly one incoming arc. In this paper, we reveal the reconfigurability of the union of $k$ arborescences for fixed $k$ in the following sense:…

Rotation distance between trees measures the number of simple operations it takes to transform one tree into another. There are no known polynomial-time algorithms for computing rotation distance. In the case of ordered rooted trees, we…

We study distorted metrics on binary trees in the context of phylogenetic reconstruction. Given a binary tree $T$ on $n$ leaves with a path metric $d$, consider the pairwise distances $\{d(u,v)\}$ between leaves. It is well known that these…

A {\em tree cover} of a metric space $(X,d)$ is a collection of trees, so that every pair $x,y\in X$ has a low distortion path in one of the trees. If it has the stronger property that every point $x\in X$ has a single tree with low…

This paper provides the generating series for the embedding of tree-like graphs of arbitrary number of vertices, accourding to their genus. It applies and extends the techniques of Chan, where it was used to give an alternate proof of the…

The classical Fourier transform is, in essence, a way to take data and extract components (in the form of complex exponentials) which are invariant under cyclic shifts. We consider a case in which the components must instead be invariant…

An element $g$ of a group is called reversible if it is conjugate in the group to its inverse. An element is an involution if it is equal to its inverse. This paper is about factoring elements as products of reversibles in the group…

Tree rearrangements such as Nearest Neighbor Interchange (NNI) and Subtree Prune and Regraft (SPR) are commonly used to explore phylogenetic treespace. Computing distances based on them, however, is often intractable, so the efficiently…

This paper proves the reconstruction conjecture for graphs which are isomorphic to the cube of a tree. The proof uses the reconstructibility of trees from their peripheral vertex deleted subgraphs. The main result follows from (i)…

Three standard subtree transfer operations for binary trees, used in particular for phylogenetic trees, are: tree bisection and reconnection ($TBR$), subtree prune and regraft ($SPR$) and rooted subtree prune and regraft ($rSPR$). For a…

Suppose $G$ is a tree. Graham's "Tree Reconstruction Conjecture" states that $G$ is uniquely determined by the integer sequence $|G|$, $|L(G)|$, $|L(L(G))|$, $|L(L(L(G)))|$, $\ldots$, where $L(H)$ denotes the line graph of the graph $H$.…

A genus one labeled circle tree is a tree with its vertices on a circle, such that together they can be embedded in a surface of genus one, but not of genus zero. We define an e-reduction process whereby a special type of subtree, called an…

Computing the reversal distances of signed permutations is an important topic in Bioinformatics. Recently, a new lower bound for the reversal distance was obtained via the plane permutation framework. This lower bound appears different from…