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The secretion of vesicles for intracellular transport often rely on the aggregation of specialized membrane-bound proteins into a coat able to curve cell membranes. The nucleation and growth of a protein coat is a kinetic process that…

Subcellular Processes · Quantitative Biology 2009-11-13 Lionel Foret , Pierre Sens

We present a comprehensive theoretical study of the topological surface states (TSS) of Bi$_2$Se$_3$, a 3D topological insulator, epitaxially grown on twisted bilayer graphene (tBG). The moir\'e potential induced by tBG folds the TSS Dirac…

Mesoscale and Nanoscale Physics · Physics 2025-05-06 Yoonkang Kim

We investigate the domain wall network in twisted bilayer graphene (TBG) under the influence of interlayer bias and screening effect from the layered structure. Starting from the continuum model, we analyze the low-energy domain wall modes…

Mesoscale and Nanoscale Physics · Physics 2024-07-22 Hao-Chien Wang , Chen-Hsuan Hsu

In this article we review recent work on van der Waals (vdW) systems in which at least one of the components has strong spin-orbit coupling. We focus on a selection of vdW heterostructures to exemplify the type of interesting electronic…

Mesoscale and Nanoscale Physics · Physics 2020-06-04 Enrico Rossi , Christopher Triola

Understanding and modelling the complexity of the immune system is a challenge that is shared by the ImmunoComplexiT$^1$ thematic network from the RNSC. The immune system is a complex biological, adaptive, highly diversified, self-organized…

Quantitative Methods · Quantitative Biology 2020-08-27 Véronique Thomas-Vaslin

Lipid membranes form the barrier between the inside and outside of cells and many of their subcompartments. As such, they bind to a wide variety of nano- and micrometer sized objects and, in the presence of strong adhesive forces, strongly…

Soft Condensed Matter · Physics 2021-08-31 Hendrik T. Spanke , Jaime Agudo-Canalejo , Daniel Tran , Robert W. Style , Eric R. Dufresne

The structure and dynamics of a typical biological system are complex due to strong and inhomogeneous interactions between its constituents. The investigation of such systems with classical mathematical tools, such as differential equations…

Molecular Networks · Quantitative Biology 2008-02-15 Murat Tuğrul

Increasingly, experimentalists and modellers alike have come to recognise the important role of spatial structure in infection dynamics. Almost invariably, spatial computational models of viral infections - as with in vitro experimental…

Quantitative Methods · Quantitative Biology 2025-04-11 Thomas Williams , James M. McCaw , James M. Osborne

Recent findings suggest that shell protein distribution and morphology of bacterial microcompartments regulate the chemical fluxes facilitating reactions which dictate their biological function. We explore how the morphology and component…

Soft Condensed Matter · Physics 2023-07-25 Curt Waltmann , Ahis Shrestha , Monica Olvera de la Cruz

The problem Defensive $\delta$-Covering, for some covering range $\delta > 0$, is a continuous facility location problem on undirected graphs where all edges have unit length. It is a generalization of Defensive Dominating Set and…

Computational Complexity · Computer Science 2026-05-12 Christoph Grüne , Tom Janßen

Biomimetic scale-covered substrates are architected meta-structures exhibiting fascinating emergent nonlinearities via the geometry of collective scales contacts. In spite of much progress in understanding their elastic nonlinearity, their…

Soft Condensed Matter · Physics 2024-03-14 Hossein Ebrahimi , Milos Krsmanovic , Hessein Ali , Ranajay Ghosh

The Guard-Guardee model for plant immunity describes how resistance proteins (guards) in host cells monitor host target proteins (guardees) that are manipulated by pathogen effector proteins. A recently suggested extension of this model…

Populations and Evolution · Quantitative Biology 2017-02-07 Iaroslav Ispolatov , Michael Doebeli

In twisted bilayer graphene (TBG), a twist-angle-dependent competition between interlayer stacking energy and intralayer elastic energy results in flat rigid layers at large twist angles and lattice reconstruction at small twist angles.…

Mesoscale and Nanoscale Physics · Physics 2023-03-29 Xiao-Feng Zhou , Yi-Wen Liu , Chen-Yue Hao , Chao Yan , Qi Zheng , Ya-Ning Ren , Ya-Xin Zhao , Kenji Watanabe , Takashi Taniguchi , Lin He

We present a variational wavefunction which explains the behaviour of the supersolid state formed by hard-core bosons on the triangular lattice. The wavefunction is a linear superposition of {\em only and all} configurations minimising the…

Statistical Mechanics · Physics 2009-11-13 Arnab Sen , Prasenjit Dutt , Kedar Damle , R. Moessner

Highly oriented solid-supported lipid membranes in stacks of controlled number $N \simeq 16$ (oligo-membranes) have been prepared by spin-coating using the uncharged lipid model system 1,2-dimyristoyl-sn-glycero-3-phosphocholine (DMPC). The…

Soft Condensed Matter · Physics 2015-04-10 Ulrike Mennicke , Doru Constantin , Tim Salditt

In this paper, we review the computational aspects of a multiscale dissipative particle dynamics model for complex fluid simulations based on the feature-rich geometry of the Voronoi tessellation. The geometrical features of the model are…

Soft Condensed Matter · Physics 2009-11-10 G. De Fabritiis , P. V. Coveney

Here we present a theoretical analysis (applicable to all twist angles of TBG) of band dispersion and density of states in TBG relating evolution of flat band and Van-Hove singularities with evolution of interlayer coupling in TBG. A simple…

Mesoscale and Nanoscale Physics · Physics 2024-08-09 Veerpal , B. R. K. Nanda , Ajay

Lipid bilayer membranes are the fundamental biological barriers that permit life. The bilayer dynamics largely participates in orchestrating cellular workings and is characterized by substantial stability together with extreme plasticity…

Soft Condensed Matter · Physics 2022-12-05 Matteo Bottacchiari , Mirko Gallo , Marco Bussoletti , Carlo Massimo Casciola

This work justifies the paradigmatic importance of viscoelastic subdiffusion in random environments for cellular biological systems. This model displays several remarkable features, which makes it an attractive paradigm to explain the…

Statistical Mechanics · Physics 2021-02-02 Igor Goychuk , Thorsten Pöschel

Epithelial monolayers are a central building block of complex organisms. Topological defects have emerged as important elements for single cell behavior in flat epithelia. Here we theoretically study such defects in a three-dimensional…

Biological Physics · Physics 2025-02-19 Oliver M. Drozdowski , Ulrich S. Schwarz