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Bacterial genomes are partitioned into kilobases long domains that are topologically independent from each other, meaning that change of DNA superhelicity in one domain does not propagate to neighbours. This is made possible by proteins…

Biological Physics · Physics 2025-10-08 Marc Joyeux

The effective surface dilatational viscosity is calculated of a flat interface separating two immiscible fluids laden with half-immersed monodisperse rigid spherical non-Brownian particles in the limit of high particle concentration. The…

Soft Condensed Matter · Physics 2014-11-19 S. V. Lishchuk

Flexible slender structures such as rods, ribbons, plates, and shells exhibit extreme nonlinear responses bending, twisting, buckling, wrinkling, and self contact, that defy conventional simulation frameworks. Discrete Differential Geometry…

In recent years the functionality of synthetic active microparticles has edged even closer to that of their biological counterparts. However, we still lack the understanding needed to recreate at the microscale key features of autonomous…

Soft Condensed Matter · Physics 2024-10-28 Philipp W. A. Schönhöfer , Sharon C. Glotzer

We study the problem of decomposing a volume bounded by a smooth surface into a collection of Voronoi cells. Unlike the dual problem of conforming Delaunay meshing, a principled solution to this problem for generic smooth surfaces remained…

Connecting the collective behavior of disordered systems with local structure on the particle scale is an important challenge, for example in granular and glassy systems. Compounding complexity, in many scientific and industrial…

Soft Condensed Matter · Physics 2016-11-21 Fabian M. Schaller , Robert F. B. Weigel , Sebastian C. Kapfer

The purpose of this paper is to study the shapes and stabilities of bio-membranes within the framework of exterior differential forms. After a brief review of the current status in theoretical and experimental studies on the shapes of…

Soft Condensed Matter · Physics 2007-05-23 Z. C. Tu , Z. C. Ou-Yang

Discontinuous Galerkin (DG) schemes on unstructured meshes offer the advantages of compactness and the ability to handle complex computational domains. However, their robustness and reliability in solving hyperbolic conservation laws depend…

Numerical Analysis · Mathematics 2024-09-17 Shengrong Ding , Shumo Cui , Kailiang Wu

Cross-sections of cell shapes in a tissue monolayer typically resemble a tiling of convex polygons. Yet, examples exist where the polygons are not convex with curved cell-cell interfaces, as seen in the adaxial epidermis. To date,…

Biological Physics · Physics 2024-06-21 Kyungeun Kim , J. M. Schwarz , Martine Ben Amar

The packaging of genetic material within a protein shell, called the capsid, marks a pivotal step in the life cycle of numerous single-stranded RNA viruses. Understanding how hundreds, or even thousands, of proteins assemble around the…

Biological Physics · Physics 2024-09-04 Siyu Li , Guillaume Tresset , Roya Zandi

To take full advantage of twisted bilayers of graphene or other two-dimensional materials, it is essential to precisely control the twist angle between the stacked layers, as this parameter determines the properties of the heterostructure.…

Materials Science · Physics 2024-11-19 Hao Yin , Mark Hutter , Christian Wagner , F. Stefan Tautz , François C. Bocquet , Christian Kumpf

Consider a rational elliptic surface over a field $k$ with characteristic $0$ given by $\mathcal{E}: y^2 = x^3 + f(t)x + g(t)$, with $f,g\in k[t]$, $\text{deg}(f) \leq 4$ and $\text{deg}(g) \leq 6$. If all the bad fibres are irreducible,…

Algebraic Geometry · Mathematics 2025-04-14 Julie Desjardins , Vojin Jovanovic

Bilayer graphene (BLG) has recently attracted a great deal of attention because of its electrically tunable energy gaps and its unusual electronic structure. In this Letter we present analytical and semi-analytical expressions, based on the…

Strongly Correlated Electrons · Physics 2009-12-03 Giovanni Borghi , Marco Polini , Reza Asgari , A. H. MacDonald

Under the most common experimental conditions, the adsorption of proteins to solid surfaces is an spontaneous process that leads to a rather compact layer of randomly oriented molecules. Due to the importance of this process for the…

Soft Condensed Matter · Physics 2022-06-29 Sergio A. Urzúa , Perla Y. Sauceda-Oloño , Carlos D. García , Christopher D. Cooper

Although the auger-like 'swimming' motility of the African trypanosome was described upon its discovery over one hundred years ago, the precise biomechanical and biophysical properties of trypanosome flagellar motion has not been…

Biological Physics · Physics 2016-09-08 D. Fry , N. Hutchings , A. Ludu

How can dense biological tissue maintain sharp boundaries between coexisting cell populations? We explore this question within a simple vertex model for cells, focusing on the role of topology and tissue surface tension. We show that the…

Soft Condensed Matter · Physics 2018-02-07 Daniel M. Sussman , J. M. Schwarz , M. Cristina Marchetti , M. Lisa Manning

Twisted bilayer graphene (TBG) exhibits a wide range of intriguing physical properties, such as superconductivity, ferromagnetism, and superlubricity. Depending on the twist angle, periodic moir\'e superlattices form in twisted bilayer…

Mesoscale and Nanoscale Physics · Physics 2022-06-07 Vahid Morovati , Zhiming Xue , Kenneth M. Liechti , Rui Huang

We develop coarse-grained models that describe the dynamic encapsidation of functionalized nanoparticles by viral capsid proteins. We find that some forms of cooperative interactions between protein subunits and nanoparticles can…

Biomolecules · Quantitative Biology 2009-11-13 Michael F. Hagan

Living cells establish long-range orientational order through collective alignment, giving rise to topological defects whose functional relevance is increasingly recognized in tissue organization and morphogenesis. Engineered topographical…

Soft Condensed Matter · Physics 2025-12-01 Prasoon Awasthi , Aniruddh Murali , Ellen Juel Pørtner , Adam Cohen Simonsen , Francesca Serra

Fluid membranes made out of lipid bilayers are the fundamental separation structure in eukaryotic cells. Many physiological processes rely on dramatic shape and topological changes (e.g. fusion, fission) of fluid membrane systems. Fluidity…

Numerical Analysis · Mathematics 2010-07-29 Marino Arroyo , Antonio DeSimone , Luca Heltai