Related papers: On DNA Codes using the Ring Z4 + wZ4
In this paper, we construct self-dual codes from a construction that involves 2x2 block circulant matrices, group rings and a reverse circulant matrix. We provide conditions whereby this construction can yield self-dual codes. We construct…
We investigate linear codes over the ring $\mathbb{Z}_4 + u\mathbb{Z}_4 + v\mathbb{Z}_4 + w\mathbb{Z}_4 + uv\mathbb{Z}_4 + uw\mathbb{Z}_4 + vw\mathbb{Z}_4 + uvw\mathbb{Z}_4$, with conditions $u^2=u$, $v^2=v$, $w^2=w$, $uv=vu$, $uw=wu$ and…
Cyclic codes over R have been introduced recently. In this paper, we study the cyclic codes over R and their $\Z_2$ image. Making use of algebraic structure, we find the some good $\Z_2$ codes of length 28.
We describe properties and constructions of constraint-based codes for DNA-based data storage which account for the maximum repetition length and AT/GC balance. We present algorithms for computing the number of sequences with maximum…
Convolutional codes are error-correcting linear codes that utilize shift registers to encode. These codes have an arbitrary block size and they can incorporate both past and current information bits. DNA codes represent DNA sequences and…
The biological distinction between the base positions in the codon, the chemical types of bases (purine and pyrimidine) and their hydrogen bond number have been the most relevant codon properties used in the genetic code analysis. Now,…
In this note, we study the classification of $\mathbb{Z}_4$-codes. For some special cases $(k_1,k_2)$, by hand, we give a classification of $\mathbb{Z}_4$-codes of length $n$ and type $4^{k_1}2^{k_2}$ satisfying a certain condition. Our…
This paper introduces a new family of reconstruction codes which is motivated by applications in DNA data storage and sequencing. In such applications, DNA strands are sequenced by reading some subset of their substrings. While previous…
In this work, we study codes generated by elements that come from group matrix rings. We present a matrix construction which we use to generate codes in two different ambient spaces: the matrix ring $M_k(R)$ and the ring $R,$ where $R$ is…
How to represent the genetic code? Despite the fact that it is extensively known, the DNA mapping into proteins remains as one of the relevant discoveries of genetics. However, modern genomic signal processing usually requires converting…
In this paper, we determine the dimensions of the residue codes of extremal Type II Z4-codes for lengths 32 and 40. We demonstrate that every binary doubly even self-dual code of length 32 can be realized as the residue code of some…
We study permutations over the set of $\ell$-grams, that are feasible in the sense that there is a sequence whose $\ell$-gram frequency has the same ranking as the permutation. Codes, which are sets of feasible permutations, protect…
Let $R=\mathbb{Z}_{4}[v]/\langle v^2+2v\rangle=\mathbb{Z}_{4}+v\mathbb{Z}_{4}$ ($v^2=2v$) and $n$ be an odd positive integer. Then $R$ is a local non-principal ideal ring of $16$ elements and there is a $\mathbb{Z}_{4}$-linear Gray map from…
Self-dual codes have been studied actively because they are connected with mathematical structures including block designs and lattices and have practical applications in quantum error-correcting codes and secret sharing schemes.…
In this paper, we study negacyclic codes of odd length and of length $2^k$ over the ring $R=\mathbb{Z}_4+u\mathbb{Z}_4$, $u^2=0$. We give the complete structure of negacyclic codes for both the cases. We have obtained a minimal spanning set…
A mathematical algorithm to describe DNA or RNA sequences of $N$ nucleotides by a string of $2N$ integers numbers is presented in the framework of the so called crystal basis model of the genetic code. The description allows to define a not…
A method for encoding information in DNA sequences is described. The method is based on the precision-resolution framework, and is aimed to work in conjunction with a recently suggested terminator-free template independent DNA synthesis…
We introduce an altered version of the four circulant construction over group rings for self-dual codes. We consider this construction over the binary field, the rings F_2 + uF_2 and F_4 + uF_4; using groups of order 3, 7, 9, 13, and 15.…
Let $R=\mathbb{Z}_{4}[u]/\langle u^k\rangle=\mathbb{Z}_{4}+u\mathbb{Z}_{4}+\ldots+u^{k-1}\mathbb{Z}_{4}$ ($u^k=0$) where $k\in \mathbb{Z}^{+}$ satisfies $k\geq 2$. For any odd positive integer $n$, it is known that cyclic codes over $R$ of…
$(1+pw)$-constacyclic codes of arbitrary length over the non-principal ideal ring $\mathbb{Z}_{p^s} +u\mathbb{Z}_{p^s}$ are studied, where $p$ is a prime, $w\in \mathbb{Z}_{p^s}^{\times}$ and $s$ an integer satisfying $s\geq 2$. First, the…