Related papers: On DNA Codes using the Ring Z4 + wZ4
In this paper, we investigate $\theta$-skew cyclic codes over the ring $R= \mathbb{F}_4 + v \mathbb{F}_4$, where $v^2=v$ and $\theta$ is a non-trivial automorphism over $\mathbb{F}_4 + v \mathbb{F}_4$. This allows us to describe DNA code…
DNA strings and their properties are widely studied since last 20 years due to its applications in DNA computing. In this area, one designs a set of DNA strings (called DNA code) which satisfies certain thermodynamic and combinatorial…
In this study we determine the structure of reversible DNA codes obtained from skew cyclic codes. We show that the generators of such DNA codes enjoy some special properties. We study the structural properties of such family of codes and we…
The study of constant-weight codes in $\ell_1$-metric was motivated by the duplication-correcting problem for data storage in live DNA. It is interesting to determine the maximum size of a code given the length $n$, weight $w$, minimum…
In this paper, we give a matrix construction method for designing DNA codes that come from group matrix rings. We show that with our construction one can obtain reversible $G^k$-codes of length $kn,$ where $k, n \in \mathbb{N},$ over the…
DNA codes have many applications, such as in data storage, DNA computing, etc. Good DNA codes have large sizes and satisfy some certain constraints. In this paper, we present a new construction method for reversible DNA codes. We show that…
In this paper, we construct linear codes over $\mathbb{Z}_4$ with bounded $GC$-content. The codes are obtained using a greedy algorithm over $\mathbb{Z}_4$. Further, upper and lower bounds are derived for the maximum size of DNA codes of…
Coterm polynomials are introduced by Oztas et al. [a novel approach for constructing reversible codes and applications to DNA codes over the ring $F_2[u]/(u^{2k}-1)$, Finite Fields and Their Applications 46 (2017).pp. 217-234.], which…
DNA is a promising storage medium, but its stability and occurrence of Indel errors pose a significant challenge. The relative occurrence of Guanine(G) and Cytosine(C) in DNA is crucial for its longevity, and reverse complementary base…
In this paper, we study the codes over the matrix ring over $\mathbb{Z}_4$, which is perhaps the first time the ring structure $M_2(\mathbb{Z}_4)$ is considered as a code alphabet. This ring is isomorphic to…
DNA sequences are prone to creating secondary structures by folding back on themselves by non-specific hybridization among its nucleotides. The formation of secondary structures makes the sequences chemically inactive towards synthesis and…
This paper considers a new alphabet set, which is a ring that we call $\mathbb{F}_4R$, to construct linear error-control codes. Skew cyclic codes over the ring are then investigated in details. We define a nondegenerate inner product and…
In this paper, we mainly study the theory of linear codes over the ring $R =\mathbb{Z}_4+u\mathbb{Z}_4+v\mathbb{Z}_4+uv\mathbb{Z}_4$. By the Chinese Remainder Theorem, we have $R$ is isomorphic to the direct sum of four rings…
Z2Z4-additive codes have been defined as a subgroup of Z2^{r} x Z4^{s} in [5] where Z2, Z4 are the rings of integers modulo 2 and 4 respectively and r and s positive integers. In this study, we define a new family of codes over the set…
The rings $Z_{4}+\nu Z_{4}$ have been classified into chain rings and non-chain rings on the basis of the values of $\nu^{2} \in Z_{4}+\nu Z_{4}.$ In this paper, the structure of cyclic codes of arbitrary length over the rings $Z_{4}+\nu…
A convolutional code $\C$ over $\ZZ[D]$ is a $\ZZ[D]$-submodule of $\ZZN[D]$ where $\ZZ[D]$ stands for the ring of polynomials with coefficients in $\ZZ$. In this paper, we study the list decoding problem of these codes when the…
DNA codes have garnered significant interest due to their utilization in digital media storage, cryptography, and DNA computing. In this paper, we first extend the results of constructing reversible group codes \cite{Cengellenmis} and…
Labeling of DNA molecules is a fundamental technique for DNA visualization and analysis. This process was mathematically modeled in [1], where the received sequence indicates the positions of the used labels. In this work, we develop error…
In this paper, we solve the reversibility problem for DNA codes over the non-chain ring $R_{k,s}=\mathbb{F}_{4^{2k}}[u_1,...,u_{s}]/< u_1^2-u_1,..., u_s^2-u_s>$. We define an automorphism $\theta$ over $R_{k,s}$ which help us both find the…
Motivated by the duplication-correcting problem for data storage in live DNA, we study the construction of constant-weight codes in $\ell_1$-metric. By using packings and group divisible designs in combinatorial design theory, we give…