Related papers: On DNA Codes using the Ring Z4 + wZ4
We present new constructions of binary quantum codes from quaternary linear Hermitian self-dual codes. Our main ingredients for these constructions are nearly self-orthogonal cyclic or duadic codes over F_4. An infinite family of…
In this paper, we study self-dual codes over $\mathbb{Z}_2 \times (\mathbb{Z}_2+u\mathbb{Z}_2) $, where $u^2=0$. Three types of self-dual codes are defined. For each type, the possible values $\alpha,\beta$ such that there exists a code…
In this work, four circulant and quadratic double circulant (QDC) constructions are applied to the family of the rings R_k,m. Self-dual binary codes are obtained as the Gray images of self-dual QDC codes over R_k,m. Extremal binary…
Let $\mathbb{F}_{p^{m}}$ be a finite field with cardinality $p^{m}$ and $R=\mathbb{F}_{p^{m}}+u\mathbb{F}_{p^{m}}$ with $u^{2}=0$. We aim to determine all $\alpha+u\beta$-constacyclic codes of length $np^{s}$ over $R$, where…
The DNA storage channel is considered, in which a codeword is comprised of $M$ unordered DNA molecules. At reading time, $N$ molecules are sampled with replacement, and then each molecule is sequenced. A coded-index concatenated-coding…
Due to its higher data density, longevity, energy efficiency, and ease of generating copies, DNA is considered a promising storage technology for satisfying future needs. However, a diverse set of errors including deletions, insertions,…
We consider the problem of efficiently designing sets (codes) of equal-length DNA strings (words) that satisfy certain combinatorial constraints. This problem has numerous motivations including DNA computing and DNA self-assembly. Previous…
In this paper, we study skew cyclic codes with arbitrary length over the ring $R=\mathbb{F}_{p}+u\mathbb{F}_{p}$ where $p$ is an odd prime and $% u^{2}=0$. We characterize all skew cyclic codes of length $n$ as left $% R[x;\theta…
Due to its high data density and longevity, DNA is considered a promising medium for satisfying ever-increasing data storage needs. However, the diversity of errors that occur in DNA sequences makes efficient error-correction a challenging…
The study of correlation structure in the primary sequences of DNA is reviewed. The issues reviewed include: symmetries among 16 base-base correlation functions, accurate estimation of correlation measures, the relationship between $1/f$…
As a medium for cold data storage, DNA stands out as it promises significant gains in storage capacity and lifetime. However, it comes with its own data processing challenges to overcome. Constrained codes over the DNA alphabet…
A Z2-triple cyclic code of block length (r,s,t) is a binary code of length r+s+t such that the code is partitioned into three parts of lengthsr,s andt such that each of the three parts is invariant under the cyclic shifts of the…
Tandem duplication in DNA is the process of inserting a copy of a segment of DNA adjacent to the original position. Motivated by applications that store data in living organisms, Jain {\em et al.} (2016) proposed the study of codes that…
In this paper we treat some fractal and statistical features of the DNA sequences. First, a fractal record model of DNA sequence is proposed by mapping DNA sequences to integer sequences, followed by R/S analysis of the model and…
A family of sets $A$ is said to be an antichain if $x\not\subset y$ for all distinct $x,y\in A$, and it is said to be a distance-$r$ code if every pair of distinct elements of $A$ has Hamming distance at least $r$. Here, we prove that if…
All known terrestrial proteins are coded as continuous strings of ~20 amino acids. The patterns formed by the repetitions of elements in groups of finite sequences describes the natural architectures of protein families. We present a method…
Parts of DNA sequences known as exons and introns play very different role in coding and storage of genetic information. Here we show that their conducting properties are also very different. Taking into account long-range correlations…
There is a one-to-one correspondence between $\ell$-quasi-cyclic codes over a finite field $\mathbb F_q$ and linear codes over a ring $R = \mathbb F_q[Y]/(Y^m-1)$. Using this correspondence, we prove that every $\ell$-quasi-cyclic self-dual…
In this paper, we study $w$-frameproof codes, which are equivalent to $\{1,w\}$-separating hash families. Our main results concern binary codes, which are defined over an alphabet of two symbols. For all $w \geq 3$, and for $w+1 \leq N \leq…
We propose coding techniques that limit the length of homopolymers runs, ensure the GC-content constraint, and are capable of correcting a single edit error in strands of nucleotides in DNA-based data storage systems. In particular, for…