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The combinatorics of RNA plays a central role in biology. Mathematical biologists have several commonly-used models for RNA: words in a fixed alphabet (representing the primary sequence of nucleotides) and plane trees (representing the…

Combinatorics · Mathematics 2017-06-23 Frances Black , Elizabeth Drellich , Julianna Tymoczko

An and/or tree is usually a binary plane tree, with internal nodes labelled by logical connectives, and with leaves labelled by literals chosen in a fixed set of k variables and their negations. In the present paper, we introduce the first…

Combinatorics · Mathematics 2014-04-28 Antoine Genitrini , Cécile Mailler

A word $w=w_1\cdots w_n$ over the set of positive integers is a Motzkin word whenever $w_1=\texttt{1}$, $1\leq w_k\leq w_{k-1}+1$, and $w_{k-1}\neq w_{k}$ for $k=2, \dots, n$. It can be associated to a $n$-column Motzkin polyomino whose…

Combinatorics · Mathematics 2024-06-25 Jean-Luc Baril , Sergey Kirgizov , José L. Ramírez , Diego Villamizar

Motivated by a formula of A. Postnikov relating binary trees, we define the hook length polynomials for m-ary trees and plane forests, and show that these polynomials have a simple binomial expression. An integer value of this expression is…

Combinatorics · Mathematics 2007-05-23 Rosena R. X. Du , Fu Liu

In 1989 Erd\H{o}s and Sz\'ekely showed that there is a bijection between (i) the set of rooted trees with $n+1$ vertices whose leaves are bijectively labeled with the elements of $[\ell]=\{1,2,\dots,\ell\}$ for some $\ell \leq n$, and (ii)…

Discrete Mathematics · Computer Science 2025-10-29 Vincent Moulton , Andreas Spillner

This article is motivated by the following satisfiability question: pick uniformly at random an and/or Boolean expression of length n, built on a set of k_n Boolean variables. What is the probability that this expression is satisfiable?…

Combinatorics · Mathematics 2015-07-31 Antoine Genitrini , Cécile Mailler

A $k$-plane tree is a plane tree whose vertices are assigned labels between $1$ and $k$ in such a way that the sum of the labels along any edge is no greater than $k+1$. These trees are known to be related to $(k+1)$-ary trees, and they are…

Combinatorics · Mathematics 2022-07-12 Isaac Owino Okoth , Stephan Wagner

The Ward numbers $W(n,k)$ combinatorially enumerate set partitions with block sizes $\geq 2$ and phylogenetic trees (total partition trees). We prove that $W(n,k)$ also counts \emph{increasing Schr\"oder trees} by verifying they satisfy…

Combinatorics · Mathematics 2025-07-22 Elena L. Wang , Guoce Xin

A word $w$ is called rich if it contains $| w|+1$ palindromic factors, including the empty word. We say that a rich word $w$ can be extended in at least two ways if there are two distinct letters $x,y$ such that $wx,wy$ are rich. Let $R$…

Discrete Mathematics · Computer Science 2021-10-26 Josef Rukavicka

A graph $G = (V,E)$ is word-representable if there is a word $w$ over the alphabet $V$ such that $x$ and $y$ alternate in $w$ if and only if the edge $(x, y)$ is in $G$. It is known [6] that all $3$-colourable graphs are word-representable,…

Combinatorics · Mathematics 2018-10-01 Marc Elliot Glen

Given a set $F$ of words, one associates to each word $w$ in $F$ an undirected graph, called its extension graph, and which describes the possible extensions of $w$ on the left and on the right. We investigate the family of sets of words…

A word $u$ is a scattered factor of $w$ if $u$ can be obtained from $w$ by deleting some of its letters. That is, there exist the (potentially empty) words $u_1,u_2,..., u_n$, and $v_0,v_1,..,v_n$ such that $u = u_1u_2...u_n$ and $w =…

Formal Languages and Automata Theory · Computer Science 2019-05-27 Joel D. Day , Pamela Fleischmann , Florin Manea , Dirk Nowotka

Given a finite word $w$ over a finite alphabet $V$, consider the graph with vertex set $V$ and with an edge between two elements of $V$ if and only if the two elements alternate in the word $w$. Such a graph is said to be word-representable…

Combinatorics · Mathematics 2021-01-15 Marisa Gaetz , Caleb Ji

Any finite word $w$ of length $n$ contains at most $n+1$ distinct palindromic factors. If the bound $n+1$ is reached, the word $w$ is called rich. The number of rich words of length $n$ over an alphabet of cardinality $q$ is denoted…

Combinatorics · Mathematics 2019-03-26 Josef Rukavicka

A simple graph $G=(V,E)$ is word-representable if there exists a word $w$ over the alphabet $V$ such that letters $x$ and $y$ alternate in $w$ iff $xy\in E$. Word-representable graphs generalize several important classes of graphs. A graph…

Combinatorics · Mathematics 2019-10-03 Özgür Akgün , Ian P. Gent , Sergey Kitaev , Hans Zantema

We resolve two conjectures of Black-Drellich-Tymoczko about the numbers of valid plane trees for given primary sequences.

Combinatorics · Mathematics 2019-01-30 Adam Zsolt Wagner

The Graceful Tree Conjecture of Rosa from 1967 asserts that the vertices of each tree T of order n can be injectively labelled by using the numbers {1,2,...,n} in such a way that the absolute differences induced on the edges are pairwise…

Combinatorics · Mathematics 2020-06-23 Anna Adamaszek , Peter Allen , Codrut Grosu , Jan Hladky

A prefix normal word is a binary word with the property that no substring has more 1s than the prefix of the same length. This class of words is important in the context of binary jumbled pattern matching. In this paper we present an…

Data Structures and Algorithms · Computer Science 2014-06-23 Péter Burcsi , Gabriele Fici , Zsuzsanna Lipták , Frank Ruskey , Joe Sawada

A double occurrence word $w$ over a finite alphabet $\Sigma$ is a word in which each alphabet letter appears exactly twice. Such words arise naturally in the study of topology, graph theory, and combinatorics. Recently, double occurrence…

Combinatorics · Mathematics 2012-05-01 Jonathan Burns , Tilahun Muche

The Fibonacci word $W$ on an infinite alphabet was introduced in [Zhang et al., Electronic J. Combinatorics 2017 24(2), 2-52] as a fixed point of the morphism $2i\rightarrow (2i)(2i+1)$, $(2i+1) \rightarrow (2i+2)$, $i\geq 0$. Here, for any…

Combinatorics · Mathematics 2019-12-02 Narges Ghareghani , Pouyeh Sharifani , Morteza Mohammad-Noori
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