Related papers: Combinatorial properties of triplet covers for bin…
This work establishes combinatorial bounds on the Castelnuovo-Mumford regularity of edge ideals for trees and their multi-whiskered variants. For a tree \( T \), we give bounds for the Castelnuovo-Mumford regularity of \( I(T) \) in terms…
In a rooted tree, we call a vertex {\em balanced} if it is at equal distance from all its descendant leaves. We count balanced vertices in three different tree varieties. For decreasing binary trees, we can prove that the probability that a…
In this paper, we investigate the structural properties of trees and bipartite graphs through the lens of topological indices and combinatorial graph theory. We focus on the First and Second Hyper-Zagreb indices, $HM_1(G)$ and $HM_2(G)$,…
Increasingly, biologists are constructing evolutionary trees on large numbers of overlapping sets of taxa, and then combining them into a `supertree' that classifies all the taxa. In this paper, we ask how much coverage of the total set of…
Tree-child networks are a recently-described class of directed acyclic graphs that have risen to prominence in phylogenetics (the study of evolutionary trees and networks). Although these networks have a number of attractive mathematical…
Tanglegrams are formed by taking two rooted binary trees $T$ and $S$ with the same number of leaves and uniquely matching each leaf in $T$ with a leaf in $S$. They are usually represented using layouts, which embed the trees and the…
We study the extreme local structure of plane binary trees through the distribution of leaves at maximum depth. We first address two basic questions: (i) the asymptotic probability that exactly two leaves occur at the deepest level, and…
Rotation distances measure the differences in structure between rooted ordered binary trees. The one-dimensional skeleta of associahedra are rotation graphs, where two vertices representing trees are connected by an edge if they differ by a…
We discuss in this paper combinatorial aspects of boundary loop models, that is models of self-avoiding loops on a strip where loops get different weights depending on whether they touch the left, the right, both or no boundary. These…
This article investigates combinatorial properties of non-ambiguous trees. These objects we define may be seen either as binary trees drawn on a grid with some constraints, or as a subset of the tree-like tableaux previously defined by…
A canonical branched covering over each sufficiently good simplicial complex is constructed. Its structure depends on the combinatorial type of the complex. In this way, each closed orientable 3-manifold arises as a branched covering over…
Let $T$ be a tree. A vertex of degree one is a \emph{leaf} of $T$ and a vertex of degree at least three is a \emph{branch vertex} of $T$. A graph is said to be claw-free if it does not contain $K_{1,3}$ as an induced subgraph. In this…
Phylogenetic networks are leaf-labelled directed acyclic graphs that are used to describe non-treelike evolutionary histories and are thus a generalization of phylogenetic trees. The hybridization number of a phylogenetic network is the sum…
Motivated by a concept studied in [1], we consider a property of matrices over finite fields that generalizes triangular totally nonsingular matrices to block matrices. We show that (1) matrices with this property suffice to construct good…
A binary tanglegram is a pair <S,T> of binary trees whose leaf sets are in one-to-one correspondence; matching leaves are connected by inter-tree edges. For applications, for example in phylogenetics or software engineering, it is required…
We prove that a planar graph is generically rigid in the plane if and only if it can be embedded as a pseudo-triangulation. This generalizes the main result of math.CO/0307347 which treats the minimally generically rigid case. The proof…
We consider arrangements of axis-aligned rectangles in the plane. A geometric arrangement specifies the coordinates of all rectangles, while a combinatorial arrangement specifies only the respective intersection type in which each pair of…
Unrooted phylogenetic networks are graphs used to represent evolutionary relationships. Accurately reconstructing such networks is of great relevance for evolutionary biology. It has recently been conjectured that all phylogenetic networks…
Full binary trees naturally represent commutative non-associative products. There are many important examples of these products: finite-precision floating-point addition and NAND gates, among others. Balance in such a tree is highly…
A phylogenetic tree shows the evolutionary relationships among species. Internal nodes of the tree represent speciation events and leaf nodes correspond to species. A goal of phylogenetics is to combine such trees into larger trees, called…