Related papers: Combinatorial properties of triplet covers for bin…
In this work we study the interleaving distance between merge trees from a combinatorial point of view. We use a particular type of matching between trees to obtain a novel formulation of the distance. With such formulation, we tackle the…
A flip in a plane spanning tree $T$ is the operation of removing one edge from $T$ and adding another edge such that the resulting structure is again a plane spanning tree. For trees on a set of points in convex position we study two…
We apply some basic notions from combinatorial topology to establish various algebraic properties of edge ideals of graphs and more general Stanley-Reisner rings. In this way we provide new short proofs of some theorems from the literature…
We prove that, if $m$ is sufficiently large, every graph on $m+1$ vertices that has a universal vertex and minimum degree at least $\lfloor \frac{2m}{3} \rfloor$ contains each tree $T$ with $m$ edges as a subgraph. Our result confirms, for…
The class of self-nested trees presents remarkable compression properties because of the systematic repetition of subtrees in their structure. In this paper, we provide a better combinatorial characterization of this specific family of…
In this paper we investigate undirected discrete graphical tree models when all the variables in the system are binary, where leaves represent the observable variables and where all the inner nodes are unobserved. A novel approach based on…
Rooted phylogenetic networks are often constructed by combining trees, clusters, triplets or characters into a single network that in some well-defined sense simultaneously represents them all. We review these four models and investigate…
In this work, we propose trait-based merge trees a generalization of merge trees to feature level sets, targeting the analysis of tensor field or general multi-variate data. For this, we employ the notion of traits defined in attribute…
We associate to each toric vector bundle on a toric variety X(Delta) a "branched cover" of the fan Delta together with a piecewise-linear function on the branched cover. This construction generalizes the usual correspondence between toric…
A subtree can be induced in a natural way by a subset of leaves of a rooted tree. We study the number of nonisomorphic such subtrees induced by leaves (leaf-induced subtrees) of a rooted tree with no vertex of outdegree 1 (topological…
We develop combinatorial methods for computing the rotation distance between binary trees, i.e., equivalently, the flip distance between triangulations of a polygon. As an application, we prove that, for each n, there exist size n trees at…
Let M be an oriented compact 3-manifold and let T be a (loose) triangulation of M, with ideal vertices at the components of the boundary of M and possibly internal vertices. We show that any spin structure s on M can be encoded by extra…
The twined almost commutative structure of the standard spectral triple on the noncommutative torus with rational parameter is exhibited, by showing isomorphisms with a spectral triple on the algebra of sections of certain bundle of…
We study a partially ordered set of planar labeled rooted trees by use of combinatorial objects called Dyck tilings. A generating function of the poset is factorized when the minimum element of the poset is $312$-avoiding and satisfies some…
A trivalent diagram is a connected, two-colored bipartite graph (parallel edges allowed but not loops) such that every black vertex is of degree 1 or 3 and every white vertex is of degree 1 or 2, with a cyclic order imposed on every set of…
We define, analyze, and give efficient algorithms for two kinds of distance measures for rooted and unrooted phylogenies. For rooted trees, our measures are based on the topologies the input trees induce on triplets; that is, on…
A {$t$-stretch tree cover} of a metric space $M = (X,\delta)$, for a parameter $t \ge 1$, is a collection of trees such that every pair of points has a $t$-stretch path in one of the trees. Tree covers provide an important sketching tool…
The quantity that captures the asymptotic value of the maximum number of appearances of a given topological tree (a rooted tree with no vertices of outdegree $1$) $S$ with $k$ leaves in an arbitrary tree with sufficiently large number of…
We study compact straight-line embeddings of trees. We show that perfect binary trees can be embedded optimally: a tree with $n$ nodes can be drawn on a $\sqrt n$ by $\sqrt n$ grid. We also show that testing whether a given binary tree has…
Topological structures such as the merge tree provide an abstract and succinct representation of scalar fields. They facilitate effective visualization and interactive exploration of feature-rich data. A merge tree captures the topology of…