Related papers: The length of excitable knots
Dynamics of simplest vortex knots, unknots, and links of torus type inside an atomic Bose-Einstein condensate in anisotropic harmonic trap at zero temperature has been numerically simulated using three-dimensional Gross-Pitaevskii equation.…
The mechanical properties of polymer knots under stretching in a bad or good solvent are investigated by applying a given force $F$ to a point of the knot while keeping another point fixed. The Monte Carlo sampling of the polymer…
Motivated by recent experiments on intracellular calcium dynamics, we study the general issue of fluctuation-induced nucleation of waves in excitable media. We utilize a stochastic Fitzhugh-Nagumo model for this study, a spatially-extended…
Patterns and waves are basic and important phenomena that govern the dynamics of physical and biological systems. A common theme in investigating such systems is to identify the intrinsic factors responsible for such self-organization. The…
Semiflexible polymers are widely used as a paradigm for understanding structural phases in biomolecules including folding of proteins. Here, we compare bead-spring and bead-stick variants of coarse-grained semiflexible polymer models that…
The paper studies the excitability properties of a generalized FitzHugh-Nagumo model. The model differs from the purely competitive FitzHugh-Nagumo model in that it accounts for the effect of cooperative gating variables such as activation…
The topological effects on the thermal properties of several knot configurations are investigated using Monte Carlo simulations. In order to check if the topology of the knots is preserved during the thermal fluctuations we propose a method…
This survey reviews Kauffman's model of folded ribbon knots: knots made of a thin strip of paper folded flat in the plane. The ribbonlength is the length to width ratio of such a ribbon, and the ribbonlength problem asks to minimize the…
In this paper, the Kelvin wave and knot dynamics are studied on three dimensional smoothly deformed entangled vortex-membranes in five dimensional space. Owing to the existence of local Lorentz invariance and diffeomorphism invariance, in…
Models of pulse formation in nerve conduction have provided manifold insight not only into neuronal dynamics but also the non-linear dynamics of pulse formation in general. Recent observation of neuronal electro-chemical pulses also driving…
The statistical mechanics of single polymer knots is studied using Monte Carlo simulations. The polymers are considered on a cubic lattice and their conformations are randomly changed with the help of pivot transformations. After each…
Canards are special solutions of slow/fast systems which are ubiquitous in neuroscience and electrical engineering. Two distinct classes of canard solutions have been identified and carefully studied: folded singularity canards and torus…
Knots have been considered to be useful models for simulating molecular chains such as DNA and proteins. One quantity that we are interested on molecular knots is the minimum number of monomers necessary to realize a knot. In this paper we…
The energy minimization problem associated to uniform, isotropic, linearly elastic rods leads to a geometric variational problem for the rod centerline, whose solutions include closed, knotted curves. We give a complete description of the…
We study invasion fronts in the FitzHugh--Nagumo equation in the oscillatory regime using singular perturbation techniques. Phenomenologically, localized perturbations of the unstable steady-state grow and spread, creating temporal…
We present a ``topological'' formulation of arbitrarily shaped vortex strings in four dimensional field theory. By using a large Higgs mass expansion, we then evaluate the effective action of the closed Abrikosov-Nielsen-Olesen vortex…
Given a thin strip of paper, tie a knot, connect the ends, and flatten into the plane. This is a physical model of a folded ribbon knot in the plane, first introduced by Louis Kauffman. We study the folded ribbonlength of these folded…
There have been several existence results for the standing waves of FitzHugh-Nagumo equations. Such waves are the connecting orbits of an autonomous second-order Lagrangian system and the corresponding kinetic energy is an indefinite…
In the first part of this work a summary is provided of some recent experiments and theoretical results which are relevant in the research of systems of polymer rings in nontrivial topological conformations. Next, some advances in modeling…
We consider the FitzHugh-Nagumo system on undulated cylindrical surfaces modeling nerve axons. We show that for sufficiently small radii and for initial conditions close to radially symmetrical ones, (i) the solutions converge to their…