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Through extensive numerical simulations we investigate the evolution of knotted and linked vortices in the FitzHugh-Nagumo model. On medium time scales, of the order of a hundred times the vortex rotation period, knots simultaneously…

Pattern Formation and Solitons · Physics 2009-11-10 Paul Sutcliffe , Arthur Winfree

We study the dynamics of knotted vortices in a bulk excitable medium using the FitzHugh-Nagumo model. From a systematic survey of all knots of at most eight crossings we establish that the generic behaviour is of unsteady, irregular…

Pattern Formation and Solitons · Physics 2019-01-23 Jack Binysh , Carl A. Whitfield , Gareth P. Alexander

In this paper we present the results of parallel numerical computations of the long-term dynamics of linked vortex filaments in a three-dimensional FitzHugh-Nagumo excitable medium. In particular, we study all torus links with no more than…

Pattern Formation and Solitons · Physics 2019-03-07 Fabian Maucher , Paul Sutcliffe

A commonly accepted feature of an excitable medium is that a local excitation leads to a propagation of circular or spiral excitation wave-fronts. This is indeed the case in fully excitable medium. However, with a decrease of an…

Emerging Technologies · Computer Science 2019-04-16 Andrew Adamatzky

We introduce a geometrical extension of the FitzHugh-Nagumo equations describing propagation of electrical impulses in nerve axons. In this extension, the axon is modeled as a warped cylinder, rather than a straight line, as is usually…

Analysis of PDEs · Mathematics 2021-05-12 Afroditi Talidou , Almut Burchard , Israel Michael Sigal

We introduce and illustrate a new approach to the unknotting problem via the dynamics of vortex strings in a nonlinear partial differential equation of reaction-diffusion type. To untangle a given knot, a Biot-Savart construction is used to…

Pattern Formation and Solitons · Physics 2016-05-02 Fabian Maucher , Paul Sutcliffe

The FitzHugh-Nagumo equation, originally conceived in neuroscience during the 1960s, became a key model providing a simplified view of excitable neuron cell behavior. Its applicability, however, extends beyond neuroscience into fields like…

Pattern Formation and Solitons · Physics 2025-01-08 Daniel Cebrián-Lacasa , Pedro Parra-Rivas , Daniel Ruiz-Reynés , Lendert Gelens

We examine traveling-wave solutions on a regular ring network with one additional long-range link that spans a distance d. The nodes obey the FitzHugh-Nagumo kinetics in the excitable regime. The additional shortcut induces a plethora of…

Adaptation and Self-Organizing Systems · Physics 2015-06-23 Thomas Isele , Benedikt Hartung , Philipp Hövel , Eckehard Schöll

Rotating spiral and scroll waves (vortices) are investigated in the FitzHugh-Nagumo model of excitable media. The focus is on a parameter region in which there exists bistability between alternative stable vortices with distinct periods.…

Pattern Formation and Solitons · Physics 2015-05-19 Andrew J. Foulkes , Dwight Barkley , Vadim N. Biktashev , Irina V. Biktasheva

We consider the problem of initiation of propagating wave in a one-dimensional excitable fiber. In the FitzHugh-Nagumo theory, the key role is played by ``critical nucleus'' and ``critical pulse'' solutions whose (center-)stable manifold is…

Pattern Formation and Solitons · Physics 2009-11-13 I. Idris , V. N. Biktashev

The existence of stable links and knots is demonstrated in three-dimensional, bistable, chemical media. The reaction-diffusion medium segregates into regions of high and low concentration separated by sharp interfaces. The interfaces repel…

patt-sol · Physics 2009-10-30 Anatoly Malevanets , Raymond Kapral

The Fitzhugh-Nagumo equations have been used as a caricature of the Hodgkin-Huxley equations of neuron firing to better understand the essential dynamics of the interaction of the membrane potential and the restoring force and to capture,…

Neurons and Cognition · Quantitative Biology 2007-05-23 F. Berezovskaya , E. Camacho , S. Wirkus , G. Karev

We study the problem of initiation of excitation waves in the FitzHugh-Nagumo model. Our approach follows earlier works and is based on the idea of approximating the boundary between basins of attraction of propagating waves and of the…

Pattern Formation and Solitons · Physics 2017-09-26 B. Bezekci , V. N. Biktashev

The FitzHugh-Nagumo model describing propagation of nerve impulses in axon is given by fast-slow reaction-diffusion equations, with dependence on a parameter $\epsilon$ representing the ratio of time scales. It is well known that for all…

Dynamical Systems · Mathematics 2016-09-12 Aleksander Czechowski , Piotr Zgliczyński

Dynamics of simplest quantum vortex knots of torus type in a superfluid at zero temperature has been simulated within a regularized Biot-Savart law (the torus radii $R_0$ and $r_0$ for initial vortex configuration were large in comparison…

Other Condensed Matter · Physics 2018-06-13 Victor P. Ruban

In a weakly excitable medium, characterized by a large threshold stimulus, the free end of an isolated broken plane wave (wave tip) can either rotate (steadily or unsteadily) around a large excitable core, thereby producing a spiral…

Soft Condensed Matter · Physics 2009-10-31 Vincent Hakim , Alain Karma

Vortex stretching is a common feature of many complex flows, including turbulence. Experiments and simulations of isolated vortex knots demonstrate that this behavior can also be seen in relatively simple systems, and appears to be…

Fluid Dynamics · Physics 2023-07-03 Stefan Faaland , Diego Tapia Silva , Dustin Kleckner

Using the Klein-Majda-Damodaran model of nearly-parallel vortex filaments, we construct vortex knots and links on a torus involving periodic boundary conditions and analyze their stability. For a special class of vortex knots -- toroidal…

Pattern Formation and Solitons · Physics 2019-12-13 Theodore Kolokolnikov , Christopher Ticknor , Panayotis Kevrekidis

Knotted ribbons form an important topic in knot theory. They have applications in natural sciences, such as cyclic duplex DNA modeling. A flat knotted ribbon can be obtained by gently pulling a knotted ribbon tight so that it becomes flat…

Geometric Topology · Mathematics 2018-09-07 Grace Tian

Physical knot theory, where knots are treated like physical objects, is important to many fields. One natural problem is to give a knot a uniform charge, and analyze the resulting electric field and electric potential. There have been some…

Complex Variables · Mathematics 2025-03-04 Henry Jiang
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