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Pairwise alignment of DNA sequencing data is a ubiquitous task in bioinformatics and typically represents a heavy computational burden. A standard approach to speed up this task is to compute "sketches" of the DNA reads (typically via…

Information Theory · Computer Science 2021-07-12 Ilan Shomorony , Govinda M. Kamath

We introduce data structures for solving robust regression through stochastic gradient descent (SGD) by sampling gradients with probability proportional to their norm, i.e., importance sampling. Although SGD is widely used for large scale…

Machine Learning · Computer Science 2022-07-19 Sepideh Mahabadi , David P. Woodruff , Samson Zhou

We consider sketching algorithms which first compress data by multiplication with a random sketch matrix, and then apply the sketch to quickly solve an optimization problem, e.g., low-rank approximation and regression. In the learning-based…

Machine Learning · Computer Science 2024-04-12 Yi Li , Honghao Lin , Simin Liu , Ali Vakilian , David P. Woodruff

We introduce a sketch-and-solve approach to speed up the Peng-Wei semidefinite relaxation of k-means clustering. When the data is appropriately separated we identify the k-means optimal clustering. Otherwise, our approach provides a…

Machine Learning · Computer Science 2022-11-30 Charles Clum , Dustin G. Mixon , Soledad Villar , Kaiying Xie

This work introduces two techniques for the design and analysis of branching algorithms, illustrated through the case study of the Vertex Cover problem. First, we present a method for automatically generating branching rules through a…

Data Structures and Algorithms · Computer Science 2025-10-13 Katie Clinch , Serge Gaspers , Tao Zixu He , Simon Mackenzie , Tiankuang Zhang

We introduce a new method for two-sample testing of high-dimensional linear regression coefficients without assuming that those coefficients are individually estimable. The procedure works by first projecting the matrices of covariates and…

Statistics Theory · Mathematics 2023-05-11 Fengnan Gao , Tengyao Wang

For a tall $n\times d$ matrix $A$ and a random $m\times n$ sketching matrix $S$, the sketched estimate of the inverse covariance matrix $(A^\top A)^{-1}$ is typically biased: $E[(\tilde A^\top\tilde A)^{-1}]\ne(A^\top A)^{-1}$, where…

Data Structures and Algorithms · Computer Science 2021-07-13 Michał Dereziński , Zhenyu Liao , Edgar Dobriban , Michael W. Mahoney

Data sketches are approximate succinct summaries of long streams. They are widely used for processing massive amounts of data and answering statistical queries about it in real-time. Existing libraries producing sketches are very fast, but…

Data Structures and Algorithms · Computer Science 2019-12-06 Arik Rinberg , Alexander Spiegelman , Edward Bortnikov , Eshcar Hillel , Idit Keidar , Lee Rhodes , Hadar Serviansky

We investigate regularized algorithms combining with projection for least-squares regression problem over a Hilbert space, covering nonparametric regression over a reproducing kernel Hilbert space. We prove convergence results with respect…

Machine Learning · Statistics 2018-10-09 Junhong Lin , Volkan Cevher

Graph sketching is a powerful technique introduced by the seminal work of Ahn, Guha and McGregor'12 on connectivity in dynamic graph streams that has enjoyed considerable attention in the literature since then, and has led to near optimal…

Data Structures and Algorithms · Computer Science 2020-11-16 Arnold Filtser , Michael Kapralov , Navid Nouri

A well-known problem in data science and machine learning is {\em linear regression}, which is recently extended to dynamic graphs. Existing exact algorithms for updating the solution of dynamic graph regression require at least a linear…

Machine Learning · Computer Science 2022-10-10 Mostafa Haghir Chehreghani

Given a symmetric matrix $A$, we show from the simple sketch $GAG^T$, where $G$ is a Gaussian matrix with $k = O(1/\epsilon^2)$ rows, that there is a procedure for approximating all eigenvalues of $A$ simultaneously to within $\epsilon…

Data Structures and Algorithms · Computer Science 2023-04-20 William Swartworth , David P. Woodruff

We revisit the well-studied problem of approximating a matrix product, $\mathbf{A}^T\mathbf{B}$, based on small space sketches $\mathcal{S}(\mathbf{A})$ and $\mathcal{S}(\mathbf{B})$ of $\mathbf{A} \in \R^{n \times d}$ and $\mathbf{B}\in…

Data Structures and Algorithms · Computer Science 2025-01-30 Majid Daliri , Juliana Freire , Danrong Li , Christopher Musco

High-dimensional sparse data present computational and statistical challenges for supervised learning. We propose compact linear sketches for reducing the dimensionality of the input, followed by a single layer neural network. We show that…

Machine Learning · Computer Science 2016-04-21 Amit Daniely , Nevena Lazic , Yoram Singer , Kunal Talwar

We consider a sketched implementation of the finite element method for elliptic partial differential equations on high-dimensional models. Motivated by applications in real-time simulation and prediction we propose an algorithm that…

Numerical Analysis · Mathematics 2020-04-22 Robert Lung , Yue Wu , Dimitris Kamilis , Nick Polydorides

A litany of theoretical and numerical results have established the sketch-and-precondition paradigm as a powerful approach to solving large linear regression problems in standard computing environments. Perhaps surprisingly, much less work…

Data Structures and Algorithms · Computer Science 2025-06-09 Tyler Chen , Pradeep Niroula , Archan Ray , Pragna Subrahmanya , Marco Pistoia , Niraj Kumar

We propose a randomized algorithm with quadratic convergence rate for convex optimization problems with a self-concordant, composite, strongly convex objective function. Our method is based on performing an approximate Newton step using a…

Optimization and Control · Mathematics 2021-05-18 Jonathan Lacotte , Yifei Wang , Mert Pilanci

We adapt a well known streaming algorithm for approximating item frequencies to the matrix sketching setting. The algorithm receives the rows of a large matrix $A \in \R^{n \times m}$ one after the other in a streaming fashion. It maintains…

Data Structures and Algorithms · Computer Science 2012-07-12 Edo Liberty

Sparse linear regression (SLR) is a well-studied problem in statistics where one is given a design matrix $X\in\mathbb{R}^{m\times n}$ and a response vector $y=X\theta^*+w$ for a $k$-sparse vector $\theta^*$ (that is, $\|\theta^*\|_0\leq…

Machine Learning · Computer Science 2025-02-06 Aparna Gupte , Neekon Vafa , Vinod Vaikuntanathan

We develop a randomized Newton method capable of solving learning problems with huge dimensional feature spaces, which is a common setting in applications such as medical imaging, genomics and seismology. Our method leverages randomized…

Optimization and Control · Mathematics 2019-10-04 Robert M. Gower , Dmitry Kovalev , Felix Lieder , Peter Richtárik
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