Related papers: Phylogenetic complexity of the Kimura 3-parameter …

A generalization of the term "generalized Clifford algebras" (as appears in papers on advances in applied Clifford algebras) is introduced. This algebra is studied by means of structure theory of central simple algebras. A graph theoretical…

Phylogenetic trees provide a fundamental representation of evolutionary relationships, yet the combinatorial explosion of possible tree topologies renders inference computationally challenging. Classical approaches to characterizing tree…

A detailed and general study of the fermionic structure of the 331 models with \beta arbitrary is carried out based on the criterion of cancellation of anomalies. We consider models with an arbitrary number of lepton and quark generations,…

A phylogenetic birth-and-death model is a probabilistic graphical model for a so-called phylogenetic profile, i.e., the size distribution for a homolog gene family at the terminal nodes of a phylogeny. Profile datasets are used in…

As a consequence of the classification of finite simple groups, the classification of permutation groups of prime degree is complete, apart from the question of when the natural degree $(q^n-1)/(q-1)$ of ${\rm L}_n(q)$ is prime. We present…

We use the Sigma^1_3 absoluteness theorem to show that the complexity of the statement "(omega,E)$ is isomorphic to an initial segment of the core model" is Pi^1_4, and that the complexity of the statement "(omega,E)$ is isomorphic to a…

The standard generators of tridiagonal algebras, recently introduced by Terwilliger, are shown to generate a new (in)finite family of mutually commuting operators which extends the Dolan-Grady construction. The involution property relies on…

A four-state mutation-selection model for the evolution of populations of DNA-sequences is investigated with particular interest in the phenomenon of error thresholds. The mutation model considered is the Kimura 3ST mutation scheme, fitness…

We apply classical quartet techniques to the problem of phylogenetic decisiveness and find a value $k$ such that all collections of at least $k$ quartets are decisive. Moreover, we prove that this bound is optimal and give a lower-bound on…

Inference of evolutionary trees and rates from biological sequences is commonly performed using continuous-time Markov models of character change. The Markov process evolves along an unknown tree while observations arise only from the tips…

Using an explicit family of plane quartic curves, we prove the existence of a genus 3 curve over any finite field of characteristic 3 whose number of rational points stays within a fixed distance from the Hasse-Weil-Serre upper bound. We…

The Lichtenbaum-Quillen conjecture for smooth complex varieties states that algebraic and topological K-theory with finite coefficients become isomorphic in high degrees. We define the "Lichtenbaum-Quillen dimension" of a variety in terms…

We provide conjectural necessary and (separately) sufficient conditions for the Hilbert scheme of points of a given length to have the maximum dimension tangent space at a point. The sufficient condition is claimed for 3D and reduces the…

For a smooth projective surface X the finite dimensionality of the Chow motive h(X), as conjectured by S.I Kimura, has several geometric consequences. For a complex surface of general type with p_g = 0 it is equivalent to Bloch's…

We consider a certain family of Kudla-Rapoport cycles on an integral model of a Shimura variety attached to a unitary group of signature (1,1), and prove that the arithmetic degrees of these cycles can be identified with the Fourier…

Populations of isogenic embryonic stem cells or clonal bacteria often exhibit extensive phenotypic heterogeneity which arises from stochastic intrinsic dynamics of cells. The internal state of the cell can be transmitted epigenetically in…

We consider different generalizations of the Euler formula and discuss the properties of the associated trigonometric functions. The problem is analyzed from different points of view and it is shown that it can be formulated in a natural…

Estimating the phylogeny of the genus Homo is entering a new phase of vastly improved data and methodology. There is increasing evidence of 6 to 10 competing species/lineages at any point in the last half million years, making the…

This study presents the approach to analyzing the evolution of an arbitrary complex system whose behavior is characterized by a set of different time-dependent factors. The key requirement for these factors is only that they must contain an…

In this paper, we prove some interesting identities, among average representation numbers (associated to definite quaternion algebras) and `degree' of Hecke correspondences on Shimura curves (associated to indefinite quaternion algebras).