Related papers: Phylogenetic complexity of the Kimura 3-parameter …

Shimura curves are moduli spaces of abelian surfaces with quaternion multiplication. Models of Shimura curves are very important in number theory. Klein's icosahedral invariants $\mathfrak{A},\mathfrak{B}$ and $\mathfrak{C}$ give the…

We study the Kuramoto model with attractive sine coupling. We introduce a complex-valued matrix formulation whose argument coincides with the original Kuramoto dynamics. We derive an exact solution for the complex-valued model, which…

In a recent paper Ahlgren, Ono and Penniston described the L-series of K3 surfaces from a certain one parameter family in terms of those of a particular family of elliptic curves. The Tate conjecture predicts the existence of a…

We construct geometric isogenies between three types of two-parameter families of K3 surfaces of Picard rank 18. One is the family of Kummer surfaces associated with Jacobians of genus-two curves admitting an elliptic involution, another is…

Phylogenetic trees are simple models of evolutionary processes. They describe conditionally independent divergent evolution of taxa from common ancestors. Phylogenetic trees commonly do not have enough flexibility to adequately model all…

We stratify families of projective and very affine hypersurfaces according to their topological Euler characteristic. Our new algorithms compute all strata using algebro-geometric techniques. For very affine hypersurfaces, we investigate…

We prove a conjecture of Pappas and Rapoport for all Shimura varieties of abelian type with parahoric level structure when $p>3$ by showing that the Kisin-Pappas-Zhou integral models of Shimura varieties of abelian type are canonical. In…

In this work we deal with parameter estimation in a latent variable model, namely the multiple-hidden i.i.d. model, which is derived from multiple alignment algorithms. We first provide a rigorous formalism for the homology structure of k…

We describe prime ideals of height 2 minimally generated by 3 elements in a Gorenstein, Nagata local ring of Krull dimension 3 and multiplicity at most 3. This subject is related to a conjecture of Y. Shimoda and to a long-standing problem…

We give a new characterisation of elliptic curves of Shimura type in terms commuting families of Frobenius lifts and also strengthen an old principal ideal theorem for ray class fields. These two results combined yield the existence of…

When the process underlying DNA substitutions varies across evolutionary history, the standard Markov models underlying standard phylogenetic methods are mathematically inconsistent. The most prominent example is the general time reversible…

We study monomial ideals with linear presentation or partially linear resolution. We give combinatorial characterizations of linear presentation for square-free ideals of degree 3, and for primary ideals whose resolutions are linear except…

We study threefolds $Y$ fibred by $A_m$-surfaces over a curve $S$ of positive genus. An ideal triangulation of $S$ defines, for each rank $m$, a quiver $Q(\Delta_m)$, hence a $CY_3$-category $(C,W)$ for any potential $W$ on $Q(\Delta_m)$.…

Genus Theory is a classical feature of integral binary quadratic forms. Using the author's generalization of the well-known correspondence between quadratic form classes and ideal classes of quadratic algebras, we extend it to the case when…

The classification of isoparametric hypersurfaces with four principal curvatures in the sphere interplays in a deep fashion with commutative algebra, whose abstract and comprehensive nature might obscure a differential geometer's insight…

In 2007, Y. Shimoda, in connection with a long-standing question of J. Sally, asked whether a Noetherian local ring, such that all its prime ideals different from the maximal ideal are complete intersections, has Krull dimension at most…

Phylogenetic networks provide a way to describe and visualize evolutionary histories that have undergone so-called reticulate evolutionary events such as recombination, hybridization or horizontal gene transfer. The level k of a network…

The structures of the ideals of Clifford algebras which can be both infinite dimensional and degenerate over the real numbers are investigated.

Let F be a finite field of characteristic 2 and h be the element x^3+y^3+xyz of F[[x,y,z]]. In an earlier paper we made a precise conjecture as to the values of the colengths of the ideals (x^q,y^q,z^q,h^j) for q a power of 2. We also…

Phylogenetic trees are the fundamental mathematical representation of evolutionary processes in biology. They are also objects of interest in pure mathematics, such as algebraic geometry and combinatorics, due to their discrete geometry.…